MOESM3 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat popul...

MOESM4 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 4: Table S2. Pairwise estimates of number of migrants (Nm) and FST. Matrix of the nu...

MOESM3 of Patterns of homozygosity in insular and continental goat breeds

Taina Cardoso (5986109)
Marcel Amills (168991)
Francesca Bertolini (731812)
Max Rothschild (3569351)
Gabriele Marras (3563912)
Geert Boink (5909772)
Jordi Jordana (3585587)
Juan Capote (2587555)
Sean Carolan (5986112)
JĂłn Hallsson (5986115)
Juha Kantanen (197090)
Agueda Pons (3585590)
Johannes Lenstra (3564824)

November 2018

Additional file 3: Figure S3. Relationship between observed heterozygosity versus (left) ROH coverag...

MOESM6 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 6: Table S4. Proportional contribution of the clusters inferred with STRUCTURE (K = ...

MOESM2 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 2: Table S2. Descriptive statistics of the genetic diversity of the 20 microsatellit...

MOESM4 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 4: Figure S2. Estimated posterior probabilities of the data for different values of ...

MOESM7 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 7: Figure S3. UPGMA clustering of the ultra-metric distance matrix obtained from the...

MOESM8 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo MartĂnez (3568421)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier CaĂąĂłn (3568424)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 8: Table S5. Demographic information on the 29 Portuguese and Spanish goat populatio...

The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Martínez Martínez, Amparo
Telo da Gama, Luís
Delgado Bermejo, Juan Vicente
Cañón, J.
Amills i Eras, Marcel
Bruno de Sousa, Carolina
Ginja, C.
Zaragoza, Pilar
Manunza, Arianna
Landi, Vincenzo
Sevane, N
BioGoat Consortium

Ajuts: The authors wish to express thanks to breeders associations and research groups who kindly pr...

RESEARCH ARTICLE The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo M. Martínez
Luis T. Gama
Juan V. Delgado
Javier Cañón
Marcel Amills
Carolina Bruno De Sousa
Catarina Ginja
Pilar Zaragoza
Arianna Manunza
Vincenzo L
Natalia Sevane

August 2016

Background: Portugal and Spain, with six and 22 officially recognized caprine breeds, encompass 25 %...

Genetic distances and taxonomic trees between goats of Ceará State (Brazil) and goats of the Mediterranean region (Europe and Africa)

Machado Théa M.M.
Chakir Mohamed
Lauvergne Jean Jacques

January 2000

Goats of an undefined breed (called UDB) from the State of Ceará, northeastern Brazil (N = 447), Eur...

Detecting the existence of gene flow between Spanish and North African goats through a coalescent approach

Martínez Martínez, Amparo
Manunza, Arianna
Delgado Bermejo, Juan Vicente
Landi, Vincenzo
Adebambo, Ayotunde
Ismaila, Muritala
Capote, Juan
El Ouni, Mabrouk
Elbeltagy, Ahmed
Abushady, Asmaa M.
Galal, Salah
Ferrando, Ainhoa
Gómez, Mariano
Pons Barro, Agueda L.
Badaoui, Bouabid
Jordana i Vidal, Jordi
Vidal, Oriol
Amills i Eras, Marcel

Human-driven migrations are one of the main processes shaping the genetic diversity and population s...

MOESM3 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 3: Figure S1. Plot of FIS values. Red dots identify populations with statistically s...

Geographical patterning of sixteen goat breeds from Italy, Albani a and Greece assessed by Single Nucleotide Polymorphisms

Pariset, Lorraine
Cuteri, Antonella
Ligda, Christina
Ajmone-Marsan, Paolo
Valentini, Alessio
Econogene Consortium

April 2011

Background: SNP data of goats of three Mediterranean countries were used for population studies and ...

Structure and genetic relationships between Brazilian naturalized and exotic purebred goat domestic goat (Capra hircus) breeds based on microsatellites

Oliveira, Joelliton Domingos de
Igarashi, Maria Luiza Silveira de Paiva
Machado, Théa Mírian Medeiros
Miretti, Marcos Mateo
Ferro, Jesus Aparecido
Contel, Eucleia Primo Betioli

March 2007

The genetic relationships and structure of fourteen goat (Capra hircus) populations were estimated b...

MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat popul...

MOESM4 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 4: Table S2. Pairwise estimates of number of migrants (Nm) and FST. Matrix of the nu...

MOESM3 of Patterns of homozygosity in insular and continental goat breeds

Taina Cardoso (5986109)
Marcel Amills (168991)
Francesca Bertolini (731812)
Max Rothschild (3569351)
Gabriele Marras (3563912)
Geert Boink (5909772)
Jordi Jordana (3585587)
Juan Capote (2587555)
Sean Carolan (5986112)
JĂłn Hallsson (5986115)
Juha Kantanen (197090)
Agueda Pons (3585590)
Johannes Lenstra (3564824)

November 2018

Additional file 3: Figure S3. Relationship between observed heterozygosity versus (left) ROH coverag...

MOESM6 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 6: Table S4. Proportional contribution of the clusters inferred with STRUCTURE (K = ...

MOESM2 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 2: Table S2. Descriptive statistics of the genetic diversity of the 20 microsatellit...

MOESM4 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 4: Figure S2. Estimated posterior probabilities of the data for different values of ...

MOESM7 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo Martínez (3239028)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier Cañón (122285)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 7: Figure S3. UPGMA clustering of the ultra-metric distance matrix obtained from the...

MOESM8 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo MartĂnez (3568421)
Luis Gama (3568418)
Juan Delgado (3532382)
Javier CaĂąĂłn (3568424)
Marcel Amills (168991)
Carolina Sousa (110987)
Catarina Ginja (122289)
Pilar Zaragoza (122378)
Arianna Manunza (383157)
Vincenzo Landi (122299)
Natalia Sevane (575545)

November 2015

Additional file 8: Table S5. Demographic information on the 29 Portuguese and Spanish goat populatio...

The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Martínez Martínez, Amparo
Telo da Gama, Luís
Delgado Bermejo, Juan Vicente
Cañón, J.
Amills i Eras, Marcel
Bruno de Sousa, Carolina
Ginja, C.
Zaragoza, Pilar
Manunza, Arianna
Landi, Vincenzo
Sevane, N
BioGoat Consortium

Ajuts: The authors wish to express thanks to breeders associations and research groups who kindly pr...

RESEARCH ARTICLE The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Amparo M. Martínez
Luis T. Gama
Juan V. Delgado
Javier Cañón
Marcel Amills
Carolina Bruno De Sousa
Catarina Ginja
Pilar Zaragoza
Arianna Manunza
Vincenzo L
Natalia Sevane

August 2016

Background: Portugal and Spain, with six and 22 officially recognized caprine breeds, encompass 25 %...

Genetic distances and taxonomic trees between goats of Ceará State (Brazil) and goats of the Mediterranean region (Europe and Africa)

Machado Théa M.M.
Chakir Mohamed
Lauvergne Jean Jacques

January 2000

Goats of an undefined breed (called UDB) from the State of Ceará, northeastern Brazil (N = 447), Eur...

Detecting the existence of gene flow between Spanish and North African goats through a coalescent approach

Martínez Martínez, Amparo
Manunza, Arianna
Delgado Bermejo, Juan Vicente
Landi, Vincenzo
Adebambo, Ayotunde
Ismaila, Muritala
Capote, Juan
El Ouni, Mabrouk
Elbeltagy, Ahmed
Abushady, Asmaa M.
Galal, Salah
Ferrando, Ainhoa
Gómez, Mariano
Pons Barro, Agueda L.
Badaoui, Bouabid
Jordana i Vidal, Jordi
Vidal, Oriol
Amills i Eras, Marcel

Human-driven migrations are one of the main processes shaping the genetic diversity and population s...

MOESM3 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 3: Figure S1. Plot of FIS values. Red dots identify populations with statistically s...

Geographical patterning of sixteen goat breeds from Italy, Albani a and Greece assessed by Single Nucleotide Polymorphisms

Pariset, Lorraine
Cuteri, Antonella
Ligda, Christina
Ajmone-Marsan, Paolo
Valentini, Alessio
Econogene Consortium

April 2011

Background: SNP data of goats of three Mediterranean countries were used for population studies and ...

Structure and genetic relationships between Brazilian naturalized and exotic purebred goat domestic goat (Capra hircus) breeds based on microsatellites

Oliveira, Joelliton Domingos de
Igarashi, Maria Luiza Silveira de Paiva
Machado, Théa Mírian Medeiros
Miretti, Marcos Mateo
Ferro, Jesus Aparecido
Contel, Eucleia Primo Betioli

March 2007

The genetic relationships and structure of fourteen goat (Capra hircus) populations were estimated b...

MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat popul...

MOESM4 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 4: Table S2. Pairwise estimates of number of migrants (Nm) and FST. Matrix of the nu...

MOESM3 of Patterns of homozygosity in insular and continental goat breeds

Taina Cardoso (5986109)
Marcel Amills (168991)
Francesca Bertolini (731812)
Max Rothschild (3569351)
Gabriele Marras (3563912)
Geert Boink (5909772)
Jordi Jordana (3585587)
Juan Capote (2587555)
Sean Carolan (5986112)
JĂłn Hallsson (5986115)
Juha Kantanen (197090)
Agueda Pons (3585590)
Johannes Lenstra (3564824)

November 2018

Additional file 3: Figure S3. Relationship between observed heterozygosity versus (left) ROH coverag...

MOESM3 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Abstract

Extracted data

MOESM3 of The Southwestern fringe of Europe as an important reservoir of caprine biodiversity

Abstract

Extracted data

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