Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Additional file 5: of Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism

Yasunobu Maeda (6193193)
Juan Palomares-Rius (3584996)
Akina Hino (650213)
Tanzila Afrin (3470297)
Shakhinur Mondal (6193196)
Ayako Nakatake (6193199)
Haruhiko Maruyama (388726)
Taisei Kikuchi (207213)

January 2019

Table S6. Pfam protein domains identified in the secretome of Strongyloides ratti. Protein identific...

Additional file 1: of Genetic profiles of ten Dirofilaria immitis isolates susceptible or resistant to macrocyclic lactone heartworm preventives

Catherine Bourguinat (81037)
Kathy Keller (3387011)
Jianguo Xia (229883)
Pierre Lepage (271528)
Tom McTier (4584469)
Debra Woods (4584466)
Roger Prichard (300704)

November 2017

SNP localization in Dirofilaria immitis genome. List of the SNPs that were investigated, including t...

Additional file 3: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

Orawan Phuphisut (5735354)
Pravech Ajawatanawong (5735357)
Yanin Limpanont (847321)
Onrapak Reamtong (1392406)
Supaporn Nuamtanong (3542258)
Sumate Ampawong (4264681)
Salisa Chaimon (5735360)
Paron Dekumyoy (5314520)
Dorn Watthanakulpanich (5314523)
Brett Swierczewski (4006646)
Poom Adisakwattana (5735363)

September 2018

Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81...

Additional file 13: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S4. Clustered proteomic data (peptide spectral matches) of D. immitis proteins detected inD. ...

Additional file 7: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S3. D. immitis tissue-associated Wolbachia transcript list based on hierarchical clustering. (...

Additional file 9: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S5. List of D. immitis genes that are significantly (qâ<â0.01) differentially expressed be...

Additional file 16: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S6. Euler diagrams illustrating D. immitis genes detected by transcriptomic and proteomicmeth...

Additional file 15: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S5. Euler diagrams illustrating D. immitis genes detected by transcriptomic (green) and prote...

Additional file 5: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S2. Significance (p-value) of GO terms shared between D. immitis adult male and testestranscr...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

RESEARCH ARTICLE Open Access Tissue-specific transcriptomics and proteomics of a filarial nematode and its

Wolbachia Endosymbiont
Ashley N. Luck
Kathryn G. Anderson
Colleen M. Mcclung
Nathan C. Verberkmoes
Jeremy M. Foster
Michelle L. Michalski
Barton E. Slatko

August 2016

Background: Filarial nematodes cause debilitating human diseases. While treatable, recent evidence s...

Additional file 1: Table S1. of Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

Juliane Wippler (3507467)
Manuel Kleiner (3281643)
Christian Lott (160898)
Alexander Gruhl (3507470)
Paul Abraham (1930726)
Richard Giannone (3455150)
Jacque Young (3507464)
Robert Hettich (3455141)
Nicole Dubilier (233432)

November 2016

Summary of transcriptome sequencing. Table S2. Summary of transcriptome assembly and protein databas...

Additional file 1: Table S1. of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Sequence reads for analysis. The numbers of genome shotgun reads, RNA-seq reads and ESTs are shown. ...

Additional file 9: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Supplementary text and methods. Supplementary description for signal transduction pathways and RNAi ...

Additional file 1 of RNA-Sequencing of Heterorhabditis nematodes to identify factors involved in symbiosis with Photorhabdus bacteria

Chaitra G. Bhat (14076040)
Roli Budhwar (6911663)
Jeffrey Godwin (12288359)
Adler R. Dillman (8374437)
Uma Rao (1719)
Vishal S. Somvanshi (14076043)

November 2022

Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...

Additional file 5: of Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism

Yasunobu Maeda (6193193)
Juan Palomares-Rius (3584996)
Akina Hino (650213)
Tanzila Afrin (3470297)
Shakhinur Mondal (6193196)
Ayako Nakatake (6193199)
Haruhiko Maruyama (388726)
Taisei Kikuchi (207213)

January 2019

Table S6. Pfam protein domains identified in the secretome of Strongyloides ratti. Protein identific...

Additional file 1: of Genetic profiles of ten Dirofilaria immitis isolates susceptible or resistant to macrocyclic lactone heartworm preventives

Catherine Bourguinat (81037)
Kathy Keller (3387011)
Jianguo Xia (229883)
Pierre Lepage (271528)
Tom McTier (4584469)
Debra Woods (4584466)
Roger Prichard (300704)

November 2017

SNP localization in Dirofilaria immitis genome. List of the SNPs that were investigated, including t...

Additional file 3: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

Orawan Phuphisut (5735354)
Pravech Ajawatanawong (5735357)
Yanin Limpanont (847321)
Onrapak Reamtong (1392406)
Supaporn Nuamtanong (3542258)
Sumate Ampawong (4264681)
Salisa Chaimon (5735360)
Paron Dekumyoy (5314520)
Dorn Watthanakulpanich (5314523)
Brett Swierczewski (4006646)
Poom Adisakwattana (5735363)

September 2018

Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81...

Additional file 13: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S4. Clustered proteomic data (peptide spectral matches) of D. immitis proteins detected inD. ...

Additional file 7: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S3. D. immitis tissue-associated Wolbachia transcript list based on hierarchical clustering. (...

Additional file 9: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S5. List of D. immitis genes that are significantly (qâ<â0.01) differentially expressed be...

Additional file 16: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S6. Euler diagrams illustrating D. immitis genes detected by transcriptomic and proteomicmeth...

Additional file 15: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S5. Euler diagrams illustrating D. immitis genes detected by transcriptomic (green) and prote...

Additional file 5: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S2. Significance (p-value) of GO terms shared between D. immitis adult male and testestranscr...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

RESEARCH ARTICLE Open Access Tissue-specific transcriptomics and proteomics of a filarial nematode and its

Wolbachia Endosymbiont
Ashley N. Luck
Kathryn G. Anderson
Colleen M. Mcclung
Nathan C. Verberkmoes
Jeremy M. Foster
Michelle L. Michalski
Barton E. Slatko

August 2016

Background: Filarial nematodes cause debilitating human diseases. While treatable, recent evidence s...

Additional file 1: Table S1. of Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

Juliane Wippler (3507467)
Manuel Kleiner (3281643)
Christian Lott (160898)
Alexander Gruhl (3507470)
Paul Abraham (1930726)
Richard Giannone (3455150)
Jacque Young (3507464)
Robert Hettich (3455141)
Nicole Dubilier (233432)

November 2016

Summary of transcriptome sequencing. Table S2. Summary of transcriptome assembly and protein databas...

Additional file 1: Table S1. of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Sequence reads for analysis. The numbers of genome shotgun reads, RNA-seq reads and ESTs are shown. ...

Additional file 9: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Supplementary text and methods. Supplementary description for signal transduction pathways and RNAi ...

Additional file 1 of RNA-Sequencing of Heterorhabditis nematodes to identify factors involved in symbiosis with Photorhabdus bacteria

Chaitra G. Bhat (14076040)
Roli Budhwar (6911663)
Jeffrey Godwin (12288359)
Adler R. Dillman (8374437)
Uma Rao (1719)
Vishal S. Somvanshi (14076043)

November 2022

Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...

Additional file 5: of Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism

Yasunobu Maeda (6193193)
Juan Palomares-Rius (3584996)
Akina Hino (650213)
Tanzila Afrin (3470297)
Shakhinur Mondal (6193196)
Ayako Nakatake (6193199)
Haruhiko Maruyama (388726)
Taisei Kikuchi (207213)

January 2019

Table S6. Pfam protein domains identified in the secretome of Strongyloides ratti. Protein identific...

Additional file 1: of Genetic profiles of ten Dirofilaria immitis isolates susceptible or resistant to macrocyclic lactone heartworm preventives

Catherine Bourguinat (81037)
Kathy Keller (3387011)
Jianguo Xia (229883)
Pierre Lepage (271528)
Tom McTier (4584469)
Debra Woods (4584466)
Roger Prichard (300704)

November 2017

SNP localization in Dirofilaria immitis genome. List of the SNPs that were investigated, including t...

Additional file 3: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

Orawan Phuphisut (5735354)
Pravech Ajawatanawong (5735357)
Yanin Limpanont (847321)
Onrapak Reamtong (1392406)
Supaporn Nuamtanong (3542258)
Sumate Ampawong (4264681)
Salisa Chaimon (5735360)
Paron Dekumyoy (5314520)
Dorn Watthanakulpanich (5314523)
Brett Swierczewski (4006646)
Poom Adisakwattana (5735363)

September 2018

Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81...

Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Abstract

Extracted data

Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Abstract

Extracted data

Related items

Related items