Additional file 15: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Additional file 1: of Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

Pallavi Chauhan (3256467)
Maren Wellenreuther (97837)
Bengt Hansson (41898)

December 2016

Sheet 1. RNA sequence data trimming statistic. Sheet 2: Summary of initial and final de novo assembl...

Additional file 2: Figure S1. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

Amos Schaffer (3441011)
Michael Bazarsky (3441008)
Karine Levy (3441005)
Vered Chalifa-Caspi (178858)
Uri Gat (95561)

September 2016

Clusters of DE oral and physal genes. List of all 20 clusters of oral and aboral expression produced...

Additional file 1: of Molecular characterization of immune responses of Helicoverpa armigera to infection with the mermithid nematode Ovomermis sinensis

Gui-Jie Wang (6409214)
Xiao-Rong Zhuo (6409217)
Wen-Wen Wang (4685968)
Xu-Sheng Liu (5697347)
Guo-Xiu Wang (2492125)
Jia-Lin Wang (32717)

February 2019

Figure S1. PCR analyses confirming the association of O. sinensis with bacteria. M, DL2000 DNA marke...

Additional file 16: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S6. Euler diagrams illustrating D. immitis genes detected by transcriptomic and proteomicmeth...

Additional file 9: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S5. List of D. immitis genes that are significantly (qâ<â0.01) differentially expressed be...

Additional file 13: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S4. Clustered proteomic data (peptide spectral matches) of D. immitis proteins detected inD. ...

Additional file 5: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S2. Significance (p-value) of GO terms shared between D. immitis adult male and testestranscr...

Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S7. Gene IDs, peptide spectral counts and protein descriptions for all 4162 D. immitis protein...

Additional file 7: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S3. D. immitis tissue-associated Wolbachia transcript list based on hierarchical clustering. (...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

RESEARCH ARTICLE Open Access Tissue-specific transcriptomics and proteomics of a filarial nematode and its

Wolbachia Endosymbiont
Ashley N. Luck
Kathryn G. Anderson
Colleen M. Mcclung
Nathan C. Verberkmoes
Jeremy M. Foster
Michelle L. Michalski
Barton E. Slatko

August 2016

Background: Filarial nematodes cause debilitating human diseases. While treatable, recent evidence s...

Additional file 1 of RNA-Sequencing of Heterorhabditis nematodes to identify factors involved in symbiosis with Photorhabdus bacteria

Chaitra G. Bhat (14076040)
Roli Budhwar (6911663)
Jeffrey Godwin (12288359)
Adler R. Dillman (8374437)
Uma Rao (1719)
Vishal S. Somvanshi (14076043)

November 2022

Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...

Additional file 5: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Comparison of the transcripts from the T. cystophora transcriptome with those from selected other eu...

Additional file 9: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Supplementary text and methods. Supplementary description for signal transduction pathways and RNAi ...

Additional file 1: of Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism

Yasunobu Maeda (6193193)
Juan Palomares-Rius (3584996)
Akina Hino (650213)
Tanzila Afrin (3470297)
Shakhinur Mondal (6193196)
Ayako Nakatake (6193199)
Haruhiko Maruyama (388726)
Taisei Kikuchi (207213)

January 2019

Figure S1. Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) gel images of excre...

Additional file 1: of Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

Pallavi Chauhan (3256467)
Maren Wellenreuther (97837)
Bengt Hansson (41898)

December 2016

Sheet 1. RNA sequence data trimming statistic. Sheet 2: Summary of initial and final de novo assembl...

Additional file 2: Figure S1. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

Amos Schaffer (3441011)
Michael Bazarsky (3441008)
Karine Levy (3441005)
Vered Chalifa-Caspi (178858)
Uri Gat (95561)

September 2016

Clusters of DE oral and physal genes. List of all 20 clusters of oral and aboral expression produced...

Additional file 1: of Molecular characterization of immune responses of Helicoverpa armigera to infection with the mermithid nematode Ovomermis sinensis

Gui-Jie Wang (6409214)
Xiao-Rong Zhuo (6409217)
Wen-Wen Wang (4685968)
Xu-Sheng Liu (5697347)
Guo-Xiu Wang (2492125)
Jia-Lin Wang (32717)

February 2019

Figure S1. PCR analyses confirming the association of O. sinensis with bacteria. M, DL2000 DNA marke...

Additional file 16: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S6. Euler diagrams illustrating D. immitis genes detected by transcriptomic and proteomicmeth...

Additional file 9: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S5. List of D. immitis genes that are significantly (qâ<â0.01) differentially expressed be...

Additional file 13: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S4. Clustered proteomic data (peptide spectral matches) of D. immitis proteins detected inD. ...

Additional file 5: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Figure S2. Significance (p-value) of GO terms shared between D. immitis adult male and testestranscr...

Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S7. Gene IDs, peptide spectral counts and protein descriptions for all 4162 D. immitis protein...

Additional file 7: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S3. D. immitis tissue-associated Wolbachia transcript list based on hierarchical clustering. (...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

RESEARCH ARTICLE Open Access Tissue-specific transcriptomics and proteomics of a filarial nematode and its

Wolbachia Endosymbiont
Ashley N. Luck
Kathryn G. Anderson
Colleen M. Mcclung
Nathan C. Verberkmoes
Jeremy M. Foster
Michelle L. Michalski
Barton E. Slatko

August 2016

Background: Filarial nematodes cause debilitating human diseases. While treatable, recent evidence s...

Additional file 1 of RNA-Sequencing of Heterorhabditis nematodes to identify factors involved in symbiosis with Photorhabdus bacteria

Chaitra G. Bhat (14076040)
Roli Budhwar (6911663)
Jeffrey Godwin (12288359)
Adler R. Dillman (8374437)
Uma Rao (1719)
Vishal S. Somvanshi (14076043)

November 2022

Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...

Additional file 5: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Comparison of the transcripts from the T. cystophora transcriptome with those from selected other eu...

Additional file 9: of Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction

Hideaki Hiraki (4172020)
Hiroshi Kagoshima (609990)
Christopher Kraus (691096)
Philipp Schiffer (3471914)
Yumiko Ueta (4172023)
Michael Kroiher (4172014)
Einhard Schierenberg (4172017)
Yuji Kohara (7615)

June 2017

Supplementary text and methods. Supplementary description for signal transduction pathways and RNAi ...

Additional file 1: of Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism

Yasunobu Maeda (6193193)
Juan Palomares-Rius (3584996)
Akina Hino (650213)
Tanzila Afrin (3470297)
Shakhinur Mondal (6193196)
Ayako Nakatake (6193199)
Haruhiko Maruyama (388726)
Taisei Kikuchi (207213)

January 2019

Figure S1. Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) gel images of excre...

Additional file 1: of Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

Pallavi Chauhan (3256467)
Maren Wellenreuther (97837)
Bengt Hansson (41898)

December 2016

Sheet 1. RNA sequence data trimming statistic. Sheet 2: Summary of initial and final de novo assembl...

Additional file 2: Figure S1. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

Amos Schaffer (3441011)
Michael Bazarsky (3441008)
Karine Levy (3441005)
Vered Chalifa-Caspi (178858)
Uri Gat (95561)

September 2016

Clusters of DE oral and physal genes. List of all 20 clusters of oral and aboral expression produced...

Additional file 1: of Molecular characterization of immune responses of Helicoverpa armigera to infection with the mermithid nematode Ovomermis sinensis

Gui-Jie Wang (6409214)
Xiao-Rong Zhuo (6409217)
Wen-Wen Wang (4685968)
Xu-Sheng Liu (5697347)
Guo-Xiu Wang (2492125)
Jia-Lin Wang (32717)

February 2019

Figure S1. PCR analyses confirming the association of O. sinensis with bacteria. M, DL2000 DNA marke...

Additional file 15: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Abstract

Extracted data

Additional file 15: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Abstract

Extracted data

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