Dependency between FPKM (y-axis) and TIN scores (x-axis) for 20 mCRPC samples. (a)-(j) 10 high RIN/medTIN mCRPC samples. (k)-(t) 10 low RIN/medTIN mCRPC samples. FPKM, Fragment Per Kilobase exon per Million mapped reads. r, Pearson correlation coefficient. (PDF 12400 kb
Figure S5. F-measure, ACC, MCC vs RMscore cut off. F-measure, ACC (accuracy) and MCC are plotted aga...
Table S3. This table compares the sensitivity (true-positive rate) achieved by different normalizati...
Table S1. This table summarizes the number of false positives claimed in differential expression ana...
Relationship between expression fold change measured by log2 (FPKM) and TIN fold change. (a) mCRPC d...
Smoothed scatter plots showing correlation between TIN score and transcript size. (a)-(c) three samp...
RIN (RNA integrity number) score distribution for 120 metastatic castration resistant prostate cance...
120 RNA-seq datasets generated from clinical tissues of human metastatic castration resistant prosta...
Relationship between 3â˛UTR (untranslated regoin) size and TIN score for 12 Glioblastoma (GBM) samp...
Twenty RNA-seq datasets generated from human peripheral blood mononuclear cell (PBMC)1. Accession nu...
Venn diagram showing the overlapping between 665 DEGs (before TIN correction) and 289 DEGs (after TI...
Barplot showing Pearson correlation coefficients between TIN and RNA fragment size. 12 Glioblastoma ...
Comparing fold change estimated from RNA-seq data to predetermined fold change (red dashed line). A ...
Spearmanâs correlation to RT-qPCR data of 30 genes. Correlation coefficients (x-axis) of 30 genes ...
Table S2. This table compares the p values and q values of differential expression analysis by edgeR...
Counts and FPKM for simulated data from 958 problematic genes. FPKM and read counts calculated by 12...
Figure S5. F-measure, ACC, MCC vs RMscore cut off. F-measure, ACC (accuracy) and MCC are plotted aga...
Table S3. This table compares the sensitivity (true-positive rate) achieved by different normalizati...
Table S1. This table summarizes the number of false positives claimed in differential expression ana...
Relationship between expression fold change measured by log2 (FPKM) and TIN fold change. (a) mCRPC d...
Smoothed scatter plots showing correlation between TIN score and transcript size. (a)-(c) three samp...
RIN (RNA integrity number) score distribution for 120 metastatic castration resistant prostate cance...
120 RNA-seq datasets generated from clinical tissues of human metastatic castration resistant prosta...
Relationship between 3â˛UTR (untranslated regoin) size and TIN score for 12 Glioblastoma (GBM) samp...
Twenty RNA-seq datasets generated from human peripheral blood mononuclear cell (PBMC)1. Accession nu...
Venn diagram showing the overlapping between 665 DEGs (before TIN correction) and 289 DEGs (after TI...
Barplot showing Pearson correlation coefficients between TIN and RNA fragment size. 12 Glioblastoma ...
Comparing fold change estimated from RNA-seq data to predetermined fold change (red dashed line). A ...
Spearmanâs correlation to RT-qPCR data of 30 genes. Correlation coefficients (x-axis) of 30 genes ...
Table S2. This table compares the p values and q values of differential expression analysis by edgeR...
Counts and FPKM for simulated data from 958 problematic genes. FPKM and read counts calculated by 12...
Figure S5. F-measure, ACC, MCC vs RMscore cut off. F-measure, ACC (accuracy) and MCC are plotted aga...
Table S3. This table compares the sensitivity (true-positive rate) achieved by different normalizati...
Table S1. This table summarizes the number of false positives claimed in differential expression ana...