Overview of single cell RNA sequencing datasets. (A) Total number of cells per dataset. (B) Number of high quality and low quality cells per dataset. (C) Proportion of each type of low quality cells (broken, empty, multiple). (D) Number of cells for 2i/LIF, alternative 2i/LIF, and serum/LIF condition for the training dataset (960 mESCs). (PDF 441Â kb
Box plot representation of the proportion of reads (%) corresponding to RNAs 1â6 with the various ...
Gene detection logistic regression model. See model details in Methods . Abbreviations: M expected n...
Enriched GO terms for library size normalization. This file is in a tab-separated format and contain...
Additional technical features and subsets of data. Boxplots comparing (A) ratio of of duplicated rea...
P values of t-test comparing features between each type of low quality and high quality cells (train...
P values of two-sided paired t-test comparing expression and noise level, between each type of low q...
Datasets distant from mES training data. (A) Comparing log normalized UMI counts (y-axis) and log no...
Performance assessment of single-cell RNA-seq data. Histograms of A singlecell frequencies in the nu...
Figure S3. Quality metrics for single-cell RNA sequencing. A Total gene number of cells maintained i...
This file includes: (1) supplementary methods describing details in single cell quality control and ...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
Figure S1. Density plot of read lengths for all three kits and tissues respectively by site. Site2 s...
Figure S1. RNA-seq quality detection of differential regulated genes in air and ethylene treatment. ...
Sequencing statistics for bulk cells and single-cell RNA-seq. Mapping information (to the hg19 genom...
Supplementary Figures. This file contains all of the supplementary figures for this paper. (PDF 2136...
Box plot representation of the proportion of reads (%) corresponding to RNAs 1â6 with the various ...
Gene detection logistic regression model. See model details in Methods . Abbreviations: M expected n...
Enriched GO terms for library size normalization. This file is in a tab-separated format and contain...
Additional technical features and subsets of data. Boxplots comparing (A) ratio of of duplicated rea...
P values of t-test comparing features between each type of low quality and high quality cells (train...
P values of two-sided paired t-test comparing expression and noise level, between each type of low q...
Datasets distant from mES training data. (A) Comparing log normalized UMI counts (y-axis) and log no...
Performance assessment of single-cell RNA-seq data. Histograms of A singlecell frequencies in the nu...
Figure S3. Quality metrics for single-cell RNA sequencing. A Total gene number of cells maintained i...
This file includes: (1) supplementary methods describing details in single cell quality control and ...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
Figure S1. Density plot of read lengths for all three kits and tissues respectively by site. Site2 s...
Figure S1. RNA-seq quality detection of differential regulated genes in air and ethylene treatment. ...
Sequencing statistics for bulk cells and single-cell RNA-seq. Mapping information (to the hg19 genom...
Supplementary Figures. This file contains all of the supplementary figures for this paper. (PDF 2136...
Box plot representation of the proportion of reads (%) corresponding to RNAs 1â6 with the various ...
Gene detection logistic regression model. See model details in Methods . Abbreviations: M expected n...
Enriched GO terms for library size normalization. This file is in a tab-separated format and contain...