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Concordance between conventional techniques and Ion Torrent based NGS analysis.

Wendy W. J. de Leng (2502829)
Christa G. Gadellaa-van Hooijdonk (2502823)
Françoise A. S. Barendregt-Smouter (2502826)
Marco J. Koudijs (412435)
Ies Nijman (2502805)
John W. J. Hinrichs (492654)
Edwin Cuppen (9902)
Stef van Lieshout (2502835)
Robert D. Loberg (2502814)
Maja de Jonge (2502808)
Emile E. Voest (117119)
Roel A. de Weger (551515)
Neeltje Steeghs (2502820)
Marlies H. G. Langenberg (2502832)
Stefan Sleijfer (125088)
Stefan M. Willems (2502811)
Martijn P. Lolkema (2502817)

Publication date

February 2016

DOI

10.1371/journal.pone.0149405.t001

Abstract

<p>Concordance between conventional techniques and Ion Torrent based NGS analysis.</p

Extracted data

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<p>Cross correlations between sTDAs of the two recording techniques and analysis methods.</p

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Details of verification using amplicon-based sequencing on the Ion Torrent.

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Concordance between IHC and FISH assays from 130 cases detected by both two methods.

Yun-Gang Zhang (417015)
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May 2013

<p>Concordance between IHC and FISH assays from 130 cases detected by both two methods.</p

Comparison of the iTRAQ ion ratios and the biochemical quantification ratios.

Alain Mangé (5649655)
Aurélie Goux (177308)
Stéphanie Badiou (177316)
Laure Patrier (177324)
Bernard Canaud (177330)
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March 2012

<p>Comparison of the iTRAQ ion ratios and the biochemical quantification ratios.</p

Concordance between duplicates of HL clinical samples obtained from two CodeSets, after adjusting using different methods.

Aline Talhouk (2620606)
Stefan Kommoss (2620591)
Robertson Mackenzie (2620600)
Martin Cheung (2620594)
Samuel Leung (269077)
Derek S. Chiu (2620597)
Steve E. Kalloger (453618)
David G. Huntsman (143298)
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Maria Intermaggio (2620603)
Jacek Gronwald (218515)
Fong C. Chan (2620588)
Susan J. Ramus (205214)
Christian Steidl (482300)
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April 2016

<p>Concordance between duplicates of HL clinical samples obtained from two CodeSets, after adjusting...

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Davoud Torkamaneh (768035)
Jérôme Laroche (276328)
François Belzile (276331)

August 2016

<p>Accuracy of SNP data derived using Ion Torrent reads and two different bioinformatics pipelines</...

Comparison of the frequency of variants across NGS platforms.

John Archer (235004)
Jan Weber (299007)
Kenneth Henry (299008)
Dane Winner (299009)
Richard Gibson (299010)
Lawrence Lee (129654)
Ellen Paxinos (299011)
Eric J. Arts (220561)
David L. Robertson (64202)
Larry Mimms (299012)
Miguel E. Quiñones-Mateu (299013)

February 2013

<p>The heights of the bars represent the combined frequency of V3 variants detected by the NGS platf...

Concordance between different screening methods for latent TB infection at baseline.

Rossana Scrivo (175422)
Emanuele Molteni (13876516)
Chiara Castellani (5480888)
Alessio Altobelli (13876519)
Cristiano Alessandri (18964)
Fulvia Ceccarelli (175430)
Manuela Di Franco (13016340)
Roberta Priori (18965)
Valeria Riccieri (214592)
Antonio Sili Scavalli (13876522)
Francesca Romana Spinelli (7817294)
Claudio Maria Mastroianni (9452149)
Fabrizio Conti (18962)

September 2022

Concordance between different screening methods for latent TB infection at baseline.</p

Analytical performance comparison of the purposed method with the recent literature reported detection methodologies.

Sajid Rauf (5488562)
Yaqeen Ali (5488568)
Sabir Hussain (1332675)
Fakhar Ullah (5488565)
Akhtar Hayat (1389591)

July 2018

<p>Analytical performance comparison of the purposed method with the recent literature reported dete...

Percentage of total read coverage for each species recovered in water samples from April 2016 and mock experiment, analyzed with Ion Torrent PGM and S5 instruments.

Martha Valdez-Moreno (160426)
Natalia V. Ivanova (361995)
Manuel Elías-Gutiérrez (220841)
Stephanie L. Pedersen (6619568)
Kyrylo Bessonov (431087)
Paul D. N. Hebert (127093)

April 2019

Percentage of total read coverage for each species recovered in water samples from April 2016 and mo...

Quantitative ion intensities obtained for the three derivatization products.

Jie Cheng (294193)
Shi Wang (116703)
Xiao-Ou Su (466120)

October 2013

<p>Quantitative ion intensities obtained for the three derivatization products.</p

Concordance between duplicates of OC clinical samples obtained from two CodeSets, after adjusting using different methods.

Aline Talhouk (2620606)
Stefan Kommoss (2620591)
Robertson Mackenzie (2620600)
Martin Cheung (2620594)
Samuel Leung (269077)
Derek S. Chiu (2620597)
Steve E. Kalloger (453618)
David G. Huntsman (143298)
Stephanie Chen (431827)
Maria Intermaggio (2620603)
Jacek Gronwald (218515)
Fong C. Chan (2620588)
Susan J. Ramus (205214)
Christian Steidl (482300)
David W. Scott (344608)
Michael S. Anglesio (224765)

April 2016

<p>Concordance between duplicates of OC clinical samples obtained from two CodeSets, after adjusting...

A comparison of recalculated power spectra observables from results of the two extraction methods.

Ira Wolfson (5278784)
Ramy Brustein (5278781)

April 2019

A comparison of recalculated power spectra observables from results of the two extraction methods.</...

Cross correlations between sTDAs of the two recording techniques and analysis methods.

Jana Annina Müller (3232926)
Dorothea Wendt (581046)
Birger Kollmeier (581047)
Thomas Brand (458880)

October 2016

<p>Cross correlations between sTDAs of the two recording techniques and analysis methods.</p

Comparison of the four WGS technologies versus array comparative genomic hybridization.

Jesper Eisfeldt (5007209)
Maria Pettersson (764125)
Francesco Vezzi (107361)
Josephine Wincent (2794045)
Max Käller (8703)
Joel Gruselius (6316148)
Daniel Nilsson (29307)
Elisabeth Syk Lundberg (5954063)
Claudia M. B. Carvalho (389820)
Anna Lindstrand (764128)

February 2019

Comparison of the four WGS technologies versus array comparative genomic hybridization.</p