Additional file 4: of Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

Additional file 4: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Literature compilation for haplogroup H comparative analyses. Geographic affiliations are as follows...

Multidimensional Scaling (A), and admixture analysis based on AIMs (B) of the Yungas population samples. Partitioning of continental ancestry in Yungas compared to other Bolivian populations as estimated using AIMs, mtDNA, and Y-chromosome data (C).

Tanja Heinz (392335)
Jorge Mario Cárdenas (782206)
Vanesa Álvarez-Iglesias (113179)
Jacobo Pardo-Seco (392338)
Alberto Gómez-Carballa (176683)
Carla Santos (187706)
Patricia Taboada-Echalar (392334)
Federico Martinón-Torres (255764)
Antonio Salas (42163)

August 2015

<p>The label “Bolivia” in (C) indicates ancestry estimates recomputed using the autosomal data gener...

Additional file 1 of The interplay of demography and selection during maize domestication and expansion

Li Wang (15202)
Timothy Beissinger (3291189)
Anne Lorant (3930761)
Claudia Ross-Ibarra (4589710)
Jeffrey Ross-Ibarra (49029)
Matthew Hufford (448009)

November 2017

Figure S1. Demography of maize populations. A. MSMC results before and after masking candidate regio...

Additional file 1: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo Mariño-Ramírez (24217)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S1. Lists of all SNPs that show significant ancestry-enrichment. For each admixed Latin Americ...

Additional file 2: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo MariĂąo-RamĂrez (3523928)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S2. Lists of pathways that show significant enrichment of genes with mapped ancestry-enriched ...

Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

Pardo Seco, Jacobo José
Heinz, Tanja Maria
Taboada Echalar, Patricia
Martinón Torres, Federico
Salas Ellacuriaga, Antonio

March 2016

Background: Unraveling the ancestry of ‘Afro-American’ communities is hampered by the complex demogr...

Additional file 2: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

Shaohua Fan (3265251)
Derek Kelly (6637118)
Marcia Beltrame (6637121)
Matthew Hansen (445716)
Swapan Mallick (89813)
Alessia Ranciaro (6249053)
Jibril Hirbo (566575)
Simon Thompson (3411839)
William Beggs (168608)
Thomas Nyambo (6249080)
Sabah Omar (791486)
Dawit Meskel (6637124)
Gurja Belay (3688555)
Alain Froment (168603)
Nick Patterson (27751)
David Reich (27753)
Sarah Tishkoff (6249089)

April 2019

Figure S1. A phylogeny of African lineages used the Altai Neandertal as outgroup constructed using T...

Additional file 5: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Geographic location of the 93 populations used for comparative purposes and haplogroup frequency map...

Additional file 3: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

Shaohua Fan (3265251)
Derek Kelly (6637118)
Marcia Beltrame (6637121)
Matthew Hansen (445716)
Swapan Mallick (89813)
Alessia Ranciaro (6249053)
Jibril Hirbo (566575)
Simon Thompson (3411839)
William Beggs (168608)
Thomas Nyambo (6249080)
Sabah Omar (791486)
Dawit Meskel (6637124)
Gurja Belay (3688555)
Alain Froment (168603)
Nick Patterson (27751)
David Reich (27753)
Sarah Tishkoff (6249089)

April 2019

Table S2. Enrichment test results of positively selected loci in different populations using GREAT. ...

Additional file 1: Figure A1. of Dissecting maize diversity in lowland South America: genetic structure and geographic distribution models

Mariana Bracco (3497747)
Jimena Cascales (3497750)
Julián Hernández (3497762)
Lidia Poggio (3497753)
Alexandra Gottlieb (3497756)
Verónica Lia (3497759)

August 2016

Sampling localities of the individuals included in this study. Figure A2. Evaluation of STRUCTURE ou...

Additional file 6: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Interpolation frequency maps (% of the population) of broadly distributed H sub-clades (H2, H4, H5 a...

Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1...

The Genomic Legacy of the Transatlantic Slave Trade in the Yungas Valley of Bolivia

Tanja Heinz (392335)
Jorge Mario Cárdenas (782206)
Vanesa Álvarez-Iglesias (113179)
Jacobo Pardo-Seco (392338)
Alberto Gómez-Carballa (176683)
Carla Santos (187706)
Patricia Taboada-Echalar (392334)
Federico Martinón-Torres (255764)
Antonio Salas (42163)

August 2015

<div><p>During the period of the Transatlantic Slave Trade (TAST) some enslaved Africans were forced...

Additional file 4: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S3. Commercial genotyping arrays where our subset of 32 AIMs is available. (DOCX 13 kb

Additional file 6 of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Additional_Parental_AIMs.txt. Genotypes of our subset of 32 AIMs from the two parental populations o...

Additional file 4: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Literature compilation for haplogroup H comparative analyses. Geographic affiliations are as follows...

Multidimensional Scaling (A), and admixture analysis based on AIMs (B) of the Yungas population samples. Partitioning of continental ancestry in Yungas compared to other Bolivian populations as estimated using AIMs, mtDNA, and Y-chromosome data (C).

Tanja Heinz (392335)
Jorge Mario Cárdenas (782206)
Vanesa Álvarez-Iglesias (113179)
Jacobo Pardo-Seco (392338)
Alberto Gómez-Carballa (176683)
Carla Santos (187706)
Patricia Taboada-Echalar (392334)
Federico Martinón-Torres (255764)
Antonio Salas (42163)

August 2015

<p>The label “Bolivia” in (C) indicates ancestry estimates recomputed using the autosomal data gener...

Additional file 1 of The interplay of demography and selection during maize domestication and expansion

Li Wang (15202)
Timothy Beissinger (3291189)
Anne Lorant (3930761)
Claudia Ross-Ibarra (4589710)
Jeffrey Ross-Ibarra (49029)
Matthew Hufford (448009)

November 2017

Figure S1. Demography of maize populations. A. MSMC results before and after masking candidate regio...

Additional file 1: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo Mariño-Ramírez (24217)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S1. Lists of all SNPs that show significant ancestry-enrichment. For each admixed Latin Americ...

Additional file 2: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo MariĂąo-RamĂrez (3523928)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S2. Lists of pathways that show significant enrichment of genes with mapped ancestry-enriched ...

Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

Pardo Seco, Jacobo José
Heinz, Tanja Maria
Taboada Echalar, Patricia
Martinón Torres, Federico
Salas Ellacuriaga, Antonio

March 2016

Background: Unraveling the ancestry of ‘Afro-American’ communities is hampered by the complex demogr...

Additional file 2: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

Shaohua Fan (3265251)
Derek Kelly (6637118)
Marcia Beltrame (6637121)
Matthew Hansen (445716)
Swapan Mallick (89813)
Alessia Ranciaro (6249053)
Jibril Hirbo (566575)
Simon Thompson (3411839)
William Beggs (168608)
Thomas Nyambo (6249080)
Sabah Omar (791486)
Dawit Meskel (6637124)
Gurja Belay (3688555)
Alain Froment (168603)
Nick Patterson (27751)
David Reich (27753)
Sarah Tishkoff (6249089)

April 2019

Figure S1. A phylogeny of African lineages used the Altai Neandertal as outgroup constructed using T...

Additional file 5: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Geographic location of the 93 populations used for comparative purposes and haplogroup frequency map...

Additional file 3: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

Shaohua Fan (3265251)
Derek Kelly (6637118)
Marcia Beltrame (6637121)
Matthew Hansen (445716)
Swapan Mallick (89813)
Alessia Ranciaro (6249053)
Jibril Hirbo (566575)
Simon Thompson (3411839)
William Beggs (168608)
Thomas Nyambo (6249080)
Sabah Omar (791486)
Dawit Meskel (6637124)
Gurja Belay (3688555)
Alain Froment (168603)
Nick Patterson (27751)
David Reich (27753)
Sarah Tishkoff (6249089)

April 2019

Table S2. Enrichment test results of positively selected loci in different populations using GREAT. ...

Additional file 1: Figure A1. of Dissecting maize diversity in lowland South America: genetic structure and geographic distribution models

Mariana Bracco (3497747)
Jimena Cascales (3497750)
Julián Hernández (3497762)
Lidia Poggio (3497753)
Alexandra Gottlieb (3497756)
Verónica Lia (3497759)

August 2016

Sampling localities of the individuals included in this study. Figure A2. Evaluation of STRUCTURE ou...

Additional file 6: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Interpolation frequency maps (% of the population) of broadly distributed H sub-clades (H2, H4, H5 a...

Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1...

The Genomic Legacy of the Transatlantic Slave Trade in the Yungas Valley of Bolivia

Tanja Heinz (392335)
Jorge Mario Cárdenas (782206)
Vanesa Álvarez-Iglesias (113179)
Jacobo Pardo-Seco (392338)
Alberto Gómez-Carballa (176683)
Carla Santos (187706)
Patricia Taboada-Echalar (392334)
Federico Martinón-Torres (255764)
Antonio Salas (42163)

August 2015

<div><p>During the period of the Transatlantic Slave Trade (TAST) some enslaved Africans were forced...

Additional file 4: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S3. Commercial genotyping arrays where our subset of 32 AIMs is available. (DOCX 13 kb

Additional file 6 of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Additional_Parental_AIMs.txt. Genotypes of our subset of 32 AIMs from the two parental populations o...

Additional file 4: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

Candela Hernández (4038125)
Jean Dugoujon (4038116)
Andrea Novelletto (95737)
Juan Rodríguez (3586976)
Pedro Cuesta (573271)
Rosario Calderón (720357)

May 2017

Literature compilation for haplogroup H comparative analyses. Geographic affiliations are as follows...

Multidimensional Scaling (A), and admixture analysis based on AIMs (B) of the Yungas population samples. Partitioning of continental ancestry in Yungas compared to other Bolivian populations as estimated using AIMs, mtDNA, and Y-chromosome data (C).

Tanja Heinz (392335)
Jorge Mario Cárdenas (782206)
Vanesa Álvarez-Iglesias (113179)
Jacobo Pardo-Seco (392338)
Alberto Gómez-Carballa (176683)
Carla Santos (187706)
Patricia Taboada-Echalar (392334)
Federico Martinón-Torres (255764)
Antonio Salas (42163)

August 2015

<p>The label “Bolivia” in (C) indicates ancestry estimates recomputed using the autosomal data gener...

Additional file 1 of The interplay of demography and selection during maize domestication and expansion

Li Wang (15202)
Timothy Beissinger (3291189)
Anne Lorant (3930761)
Claudia Ross-Ibarra (4589710)
Jeffrey Ross-Ibarra (49029)
Matthew Hufford (448009)

November 2017

Figure S1. Demography of maize populations. A. MSMC results before and after masking candidate regio...

Additional file 4: of Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

Abstract

Extracted data

Additional file 4: of Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

Abstract

Extracted data

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