Additional file 6 of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Additional file 1 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM map of twenty 1000 Genomes Project populations. Interactive GTM map of twenty 1000 Genomes Proje...

Additional file 8 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM projection, test set 6: Indian Telugu from the UK (ITU). Projection of Indian Telugu from the UK...

Population structure and paternal admixture landscape on present-day Mexican-mestizos revealed by Y-STR haplotypes

Salazar-Flores, J.
Dondiego-Aldape, R.
Rubi-Castellanos, R.
Anaya-Palafox, M.
Nuno-Arana, I.
Canseco-Avila, L.M.
Flores-Flores, G.
Morales-Vallejo, M.E.
Barojas-Perez, N.
Munoz-Valle, J.F.
Campos-Gutierrez, R.
Rangel-Villalobos, H.

January 2010

Mestizos currently represent most of the Mexican population (>90%); they are defined as individua...

Additional file 4: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S3. Commercial genotyping arrays where our subset of 32 AIMs is available. (DOCX 13 kb

Additional file 3: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S2. Panel of 32 AIMs proposed in this study and allele frequencies. (DOCX 16 kb

Additional file 5: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Additional_Compute_PCs.R. R script for PCs computation using genotypes of our subset of 32 AIMs. (R ...

Additional file 1: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Figure S1. Mexican mestizos projection over parental populations using our panel of 32 AIMs. Red poi...

Additional file 5 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM projection, test set 3: Mexican Ancestry from Los Angeles USA (MXL). Projection of individuals o...

A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya
Hortensia Moreno-Macías
Juan Carlos Fernández-López
María Luisa Ordóñez-Sánchez
Rosario Rodríguez-Guillén
Alejandra Contreras
Alfredo Hidalgo-Miranda
Luis Alberto Alfaro-Ruíz
Edgar Pavel Salazar-Fernandez
Andrés Moreno-Estrada
Carlos Alberto Aguilar-Salinas
Teresa Tusié-Luna

January 2019

Abstract Background Association studies are useful to unravel the genetic basis of common human dise...

Additional file 1: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo Mariño-Ramírez (24217)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S1. Lists of all SNPs that show significant ancestry-enrichment. For each admixed Latin Americ...

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas.

Galanter, Joshua Mark
Fernandez-Lopez, Juan Carlos
Gignoux, Christopher R
Barnholtz-Sloan, Jill
Fernandez-Rozadilla, Ceres
Via, Marc
Hidalgo-Miranda, Alfredo
Contreras, Alejandra V
Figueroa, Laura Uribe
Raska, Paola
Jimenez-Sanchez, Gerardo
Zolezzi, Irma Silva
Torres, Maria
Ponte, Clara Ruiz
Ruiz, Yarimar
Salas, Antonio
Nguyen, Elizabeth
Eng, Celeste
Borjas, Lisbeth
Zabala, William
Barreto, Guillermo
González, Fernando Rondón
Ibarra, Adriana
Taboada, Patricia
Porras, Liliana
Moreno, Fabián
Bigham, Abigail
Gutierrez, Gerardo
Brutsaert, Tom
León-Velarde, Fabiola
Moore, Lorna G
Vargas, Enrique
Cruz, Miguel
Escobedo, Jorge
Rodriguez-Santana, José
Rodriguez-Cintrón, William
Chapela, Rocio
Ford, Jean G
Bustamante, Carlos
Seminara, Daniela
Shriver, Mark
Ziv, Elad
Burchard, Esteban Gonzalez
Haile, Robert
Parra, Esteban
Carracedo, Angel
LACE Consortium

January 2012

Most individuals throughout the Americas are admixed descendants of Native American, European, and A...

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas

Galanter, Joshua
Fernandez, Juan Carlos
Gignoux, Christopher R.
Barnholtz-Sloan, Jill
Fernandez, Ceres
Via i García, Marc
Hidalgo-Miranda, Alfredo
Contreras, Alejandra V.
Uribe Figueroa, Laura
Raska, Paola
Jimenez-Sanchez, Gerardo
Silva Zolezzi, Irma
Torres, Maria
Ruiz-Ponte, Clara
Ruiz, Yarimar
Salas, Antonio
Nguyen, Elizabeth
Eng, Celeste
Borjas, Lisbeth
Zabala, William
Barreto, Guillermo
Rondón, Fernando
Ibarra, Adriana
Taboada, Patricia
Porras, Liliana
Moreno, Fabián
Bigham, Abigail
Gutierrez, Gerardo
Brutsaert, Tom
León-Velarde, Fabiola
Moore, Lorna G.
Vargas, Enrique
Cruz, Miguel
Escobedo, Jorge
Rodriguez-Santana, José
Rodriguez-Cintrón, William
Chapela, Rocio
Ford, Jean G.
Bustamante, Carlos D.
LACE Consortium

Most individuals throughout the Americas are admixed descendants of Native American, European, and A...

Additional file 9 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

1000 Genomes Project populations. Table of 1000 Genomes Project populations and superpopulations and...

Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1...

Additional file 1: of Population and breast cancer patients’ analysis reveals the diversity of genomic variation of the BRCA genes in the Mexican population

J. Fernández-Lopez (6197366)
S. Romero-Córdoba (6197369)
R. Rebollar-Vega (6197375)
L. Alfaro-Ruiz (6197381)
S. Jiménez-Morales (6197384)
F. Beltrán-Anaya (6197390)
R. Arellano-Llamas (6197396)
A. Cedro-Tanda (6197399)
M. Rios-Romero (6197402)
M. Ramirez-Florencio (6197405)
V. Bautista-Piña (6197408)
C. Dominguez-Reyes (6197411)
F. Villegas-Carlos (6197414)
A. Tenorio-Torres (6197417)
A. Hidalgo-Miranda (6197420)

January 2019

Table S1. Ancestry information of all Mexican Genome Diversity Project samples included in the seque...

Additional file 1 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM map of twenty 1000 Genomes Project populations. Interactive GTM map of twenty 1000 Genomes Proje...

Additional file 8 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM projection, test set 6: Indian Telugu from the UK (ITU). Projection of Indian Telugu from the UK...

Population structure and paternal admixture landscape on present-day Mexican-mestizos revealed by Y-STR haplotypes

Salazar-Flores, J.
Dondiego-Aldape, R.
Rubi-Castellanos, R.
Anaya-Palafox, M.
Nuno-Arana, I.
Canseco-Avila, L.M.
Flores-Flores, G.
Morales-Vallejo, M.E.
Barojas-Perez, N.
Munoz-Valle, J.F.
Campos-Gutierrez, R.
Rangel-Villalobos, H.

January 2010

Mestizos currently represent most of the Mexican population (>90%); they are defined as individua...

Additional file 4: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S3. Commercial genotyping arrays where our subset of 32 AIMs is available. (DOCX 13 kb

Additional file 3: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Table S2. Panel of 32 AIMs proposed in this study and allele frequencies. (DOCX 16 kb

Additional file 5: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Additional_Compute_PCs.R. R script for PCs computation using genotypes of our subset of 32 AIMs. (R ...

Additional file 1: of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya (739312)
Hortensia Moreno-Macías (739314)
Juan Fernández-López (6188372)
María Ordóñez-Sánchez (6188378)
Rosario Rodríguez-Guillén (739316)
Alejandra Contreras (3484895)
Alfredo Hidalgo-Miranda (107334)
Luis Alfaro-Ruíz (6188387)
Edgar Salazar-Fernandez (6188393)
Andrés Moreno-Estrada (2200690)
Carlos Aguilar-Salinas (260014)
Teresa Tusié-Luna (3240675)

January 2019

Figure S1. Mexican mestizos projection over parental populations using our panel of 32 AIMs. Red poi...

Additional file 5 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM projection, test set 3: Mexican Ancestry from Los Angeles USA (MXL). Projection of individuals o...

A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Alicia Huerta-Chagoya
Hortensia Moreno-Macías
Juan Carlos Fernández-López
María Luisa Ordóñez-Sánchez
Rosario Rodríguez-Guillén
Alejandra Contreras
Alfredo Hidalgo-Miranda
Luis Alberto Alfaro-Ruíz
Edgar Pavel Salazar-Fernandez
Andrés Moreno-Estrada
Carlos Alberto Aguilar-Salinas
Teresa Tusié-Luna

January 2019

Abstract Background Association studies are useful to unravel the genetic basis of common human dise...

Additional file 1: of Genetic ancestry, admixture and health determinants in Latin America

Emily Norris (4720908)
Lu Wang (45927)
Andrew Conley (3351989)
Lavanya Rishishwar (146573)
Leonardo Mariño-Ramírez (24217)
Augusto Valderrama-Aguirre (6075608)
I. Jordan (3455471)

December 2018

Table S1. Lists of all SNPs that show significant ancestry-enrichment. For each admixed Latin Americ...

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas.

Galanter, Joshua Mark
Fernandez-Lopez, Juan Carlos
Gignoux, Christopher R
Barnholtz-Sloan, Jill
Fernandez-Rozadilla, Ceres
Via, Marc
Hidalgo-Miranda, Alfredo
Contreras, Alejandra V
Figueroa, Laura Uribe
Raska, Paola
Jimenez-Sanchez, Gerardo
Zolezzi, Irma Silva
Torres, Maria
Ponte, Clara Ruiz
Ruiz, Yarimar
Salas, Antonio
Nguyen, Elizabeth
Eng, Celeste
Borjas, Lisbeth
Zabala, William
Barreto, Guillermo
González, Fernando Rondón
Ibarra, Adriana
Taboada, Patricia
Porras, Liliana
Moreno, Fabián
Bigham, Abigail
Gutierrez, Gerardo
Brutsaert, Tom
León-Velarde, Fabiola
Moore, Lorna G
Vargas, Enrique
Cruz, Miguel
Escobedo, Jorge
Rodriguez-Santana, José
Rodriguez-Cintrón, William
Chapela, Rocio
Ford, Jean G
Bustamante, Carlos
Seminara, Daniela
Shriver, Mark
Ziv, Elad
Burchard, Esteban Gonzalez
Haile, Robert
Parra, Esteban
Carracedo, Angel
LACE Consortium

January 2012

Most individuals throughout the Americas are admixed descendants of Native American, European, and A...

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas

Galanter, Joshua
Fernandez, Juan Carlos
Gignoux, Christopher R.
Barnholtz-Sloan, Jill
Fernandez, Ceres
Via i García, Marc
Hidalgo-Miranda, Alfredo
Contreras, Alejandra V.
Uribe Figueroa, Laura
Raska, Paola
Jimenez-Sanchez, Gerardo
Silva Zolezzi, Irma
Torres, Maria
Ruiz-Ponte, Clara
Ruiz, Yarimar
Salas, Antonio
Nguyen, Elizabeth
Eng, Celeste
Borjas, Lisbeth
Zabala, William
Barreto, Guillermo
Rondón, Fernando
Ibarra, Adriana
Taboada, Patricia
Porras, Liliana
Moreno, Fabián
Bigham, Abigail
Gutierrez, Gerardo
Brutsaert, Tom
León-Velarde, Fabiola
Moore, Lorna G.
Vargas, Enrique
Cruz, Miguel
Escobedo, Jorge
Rodriguez-Santana, José
Rodriguez-Cintrón, William
Chapela, Rocio
Ford, Jean G.
Bustamante, Carlos D.
LACE Consortium

Most individuals throughout the Americas are admixed descendants of Native American, European, and A...

Additional file 9 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

1000 Genomes Project populations. Table of 1000 Genomes Project populations and superpopulations and...

Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1...

Additional file 1: of Population and breast cancer patients’ analysis reveals the diversity of genomic variation of the BRCA genes in the Mexican population

J. Fernández-Lopez (6197366)
S. Romero-Córdoba (6197369)
R. Rebollar-Vega (6197375)
L. Alfaro-Ruiz (6197381)
S. Jiménez-Morales (6197384)
F. Beltrán-Anaya (6197390)
R. Arellano-Llamas (6197396)
A. Cedro-Tanda (6197399)
M. Rios-Romero (6197402)
M. Ramirez-Florencio (6197405)
V. Bautista-Piña (6197408)
C. Dominguez-Reyes (6197411)
F. Villegas-Carlos (6197414)
A. Tenorio-Torres (6197417)
A. Hidalgo-Miranda (6197420)

January 2019

Table S1. Ancestry information of all Mexican Genome Diversity Project samples included in the seque...

Additional file 1 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM map of twenty 1000 Genomes Project populations. Interactive GTM map of twenty 1000 Genomes Proje...

Additional file 8 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

HĂŠlĂŠna Gaspar (6438242)
Gerome Breen (15025)

March 2019

GTM projection, test set 6: Indian Telugu from the UK (ITU). Projection of Indian Telugu from the UK...

Population structure and paternal admixture landscape on present-day Mexican-mestizos revealed by Y-STR haplotypes

Salazar-Flores, J.
Dondiego-Aldape, R.
Rubi-Castellanos, R.
Anaya-Palafox, M.
Nuno-Arana, I.
Canseco-Avila, L.M.
Flores-Flores, G.
Morales-Vallejo, M.E.
Barojas-Perez, N.
Munoz-Valle, J.F.
Campos-Gutierrez, R.
Rangel-Villalobos, H.

January 2010

Mestizos currently represent most of the Mexican population (>90%); they are defined as individua...

Additional file 6 of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Abstract

Extracted data

Additional file 6 of A panel of 32 AIMs suitable for population stratification correction and global ancestry estimation in Mexican mestizos

Abstract

Extracted data

Related items

Related items