Co-occurrence of methylation and hydroxymethylation in pathway regulation. This file lists all pathways found to be co-occurrent between 5mC- and 5hmC-enriched regions within each cell line, providing the genomic features and gene lists associated with enrichment for each mark
Additional file7: Fig. S7. APM-induced 5hmC gain in prostate cancer cells (related to Fig. 6)
Additional file1: Fig. S1. Genome-wide profiling of 5hmC in genitourinary tissues (related to Fig. 1...
Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....
Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...
Table of open/closed compartment calls for normal prostate tissue in 100-kb genomic windows. (TXT 12...
Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...
Figure S3. Methylation and hydroxymethylation levels distribution in different types of genomic elem...
Table S7. Pathway enrichment analysis of promoter hypermethylated genes. Pathway enrichment analysis...
Additional file 2. Supplemental Table 1: Top 10 differentially methylated probes based on MCPyV and ...
Boxplots of CpGs in the top diagnostic model from hypermethylated CpGs. Normal data is from benign-a...
Additional file12: Table S4. Analysis of hMeDIP-seq and RNA-seq data of prostate cancer cells
CpG hypermethylation of CD38 in prostate cancer cell lines. Related to Fig. 3, methylation heat maps...
Published methylation signatures in HNSCCs. Ad hoc pathway analysis of common hyper- and hypomethyla...
In silico analysis of TCGA data correlating DNA methylation and mRNA expression of commonly methylat...
Table S2. A list of differentially hypermethylated and expressed genes identified by both EPIC array...
Additional file7: Fig. S7. APM-induced 5hmC gain in prostate cancer cells (related to Fig. 6)
Additional file1: Fig. S1. Genome-wide profiling of 5hmC in genitourinary tissues (related to Fig. 1...
Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....
Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...
Table of open/closed compartment calls for normal prostate tissue in 100-kb genomic windows. (TXT 12...
Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...
Figure S3. Methylation and hydroxymethylation levels distribution in different types of genomic elem...
Table S7. Pathway enrichment analysis of promoter hypermethylated genes. Pathway enrichment analysis...
Additional file 2. Supplemental Table 1: Top 10 differentially methylated probes based on MCPyV and ...
Boxplots of CpGs in the top diagnostic model from hypermethylated CpGs. Normal data is from benign-a...
Additional file12: Table S4. Analysis of hMeDIP-seq and RNA-seq data of prostate cancer cells
CpG hypermethylation of CD38 in prostate cancer cell lines. Related to Fig. 3, methylation heat maps...
Published methylation signatures in HNSCCs. Ad hoc pathway analysis of common hyper- and hypomethyla...
In silico analysis of TCGA data correlating DNA methylation and mRNA expression of commonly methylat...
Table S2. A list of differentially hypermethylated and expressed genes identified by both EPIC array...
Additional file7: Fig. S7. APM-induced 5hmC gain in prostate cancer cells (related to Fig. 6)
Additional file1: Fig. S1. Genome-wide profiling of 5hmC in genitourinary tissues (related to Fig. 1...
Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....