Additional file 1: Table S1. of Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

Additional file 5: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

Lingyang Xu (389143)
Liu Yang (23752)
Lei Wang (6656)
Bo Zhu (118038)
Yan Chen (4308)
Huijiang Gao (628320)
Xue Gao (237216)
Lupei Zhang (647384)
George Liu (122581)
Junya Li (240083)

January 2019

Summary of probe-based CNV association analysis results including probe name, chromosome, position, ...

Additional file 2: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the fat yield. Colum...

Additional file 1: of Relevance of polymorphisms in MC4R and BDNF in short normal stature

Nikolas Herrfurth (2141509)
Anna-Lena Volckmar (280948)
Triinu Peters (5677598)
Gunnar Kleinau (103422)
Anne MĂźller (5677616)
Cigdem Cetindag (5677601)
Laura Schonnop (5677604)
Manuel FĂścker (5677619)
Astrid Dempfle (73673)
Stefan Wudy (5677607)
Struan Grant (5677610)
Thomas Reinehr (87546)
Diana Cousminer (5677613)
Johannes Hebebrand (170268)
Heike Biebermann (46078)
Anke Hinney (87545)

August 2018

Table S1. Primers, PCR conditions, fragment sizes and screening methods for LEP, MC4R, MRAP2 and BDN...

Additional file 2: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Yang Zhou (65942)
Erin Connor (3539750)
George Wiggans (392282)
Yongfang Lu (3251994)
Robert Tempelman (5162687)
Steven Schroeder (77597)
Hong Chen (108084)
George Liu (122581)

May 2018

Table S1. Primer information for CNV validation. Table S2. Characteristics of CNV and their overlapp...

Additional file 1: Table S1. of Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

Shinji Sasaki (238265)
Toshio Watanabe (151136)
Shota Nishimura (238266)
Yoshikazu Sugimoto (151140)

January 2016

Characterization of cattle autosomal CNVRs based on previously published studies. Table S2 – Detaile...

Additional file 2: of Array CGH-based detection of CNV regions and their potential association with reproduction and other economic traits in Holsteins

Mei Liu (41760)
Lingzhao Fang (4023761)
Shuli Liu (627105)
Michael Pan (5351486)
Eyal Seroussi (31976)
John Cole (392281)
Li Ma (46633)
Hong Chen (108084)
George Liu (122581)

March 2019

Table S1. CNVRs identified in this study and overlapping with QTL, OMIA, and CNVRs in previous studi...

Additional file 1: of Genomic predictions combining SNP markers and copy number variations in Nellore cattle

El Hay (3540962)
Yuri Utsunomiya (3518468)
Lingyang Xu (389143)
Yang Zhou (65942)
Haroldo Neves (5343551)
Roberto Carvalheiro (523642)
Derek Bickhart (275943)
Li Ma (46633)
Jose Garcia (1371534)
George Liu (122581)

June 2018

Table S1. Detail information of the CNVs detected with high confidence. (XLSX 37 kb

Additional file 2: Table S2. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

Yahui Gao (776538)
Jianping Jiang (149448)
Shaohua Yang (143807)
Yali Hou (252579)
George Liu (122581)
Shengli Zhang (110370)
Qin Zhang (58638)
Dongxiao Sun (155488)

March 2017

Primers information and confirmation results of the 11 chosen CNVRs by qPCR analysis. (XLSX 14Â kb

Additional file 9: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

Joaquim da Silva (3455798)
Poliana Giachetto (3455801)
Luiz da Silva (3455792)
Leandro Cintra (3455804)
Samuel Paiva (184995)
Michel Yamagishi (3455795)
Alexandre Caetano (3455789)

June 2016

CNVRs overlapping with previously detected QTLs from the Bovine QTL Database. (XLSX 2973 kb

Additional file 1: of Novel insights into the genetic basis of buffalo reproductive performance

Jun Li (6494)
Jiajia Liu (345509)
Giuseppe Campanile (529389)
Graham Plastow (174335)
Chunyan Zhang (30676)
Zhiquan Wang (38051)
Martino Cassandro (5448953)
Bianca Gasparrini (529379)
Angela Salzano (5957189)
Guohua Hua (342698)
Aixin Liang (4906621)
Liguo Yang (342702)

November 2018

Table S1. Multiple Comparative Analysis of the relationship between Buffalo Haplotype block and SCA ...

Additional file 1: of First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data

F. Genova (6067403)
M. Longeri (2540983)
L. Lyons (6067412)
A. Bagnato (4221796)
M. Strillacci (4221784)

December 2018

Table S1. (XLSX). Consensus CNVs. List of the consensus list of CNVs detected by both cn.mops and CN...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 2: Table S2-S4. of Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Yiyuan Yan (617469)
Ning Yang (114965)
Hans Cheng (3418421)
Jiuzhou Song (41834)
Lujiang Qu (114956)

October 2015

Summary (Table S2) of successfully converted CNVs (Table S3) and comparison with current study (Tabl...

Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Zezhao Wang (4111030)
Bo Zhu (118038)
Hong Niu (2637253)
Wengang Zhang (3594995)
Ling Xu (117663)
Lei Xu (78676)
Yan Chen (4308)
Lupei Zhang (647384)
Xue Gao (237216)
Huijiang Gao (628320)
Shengli Zhang (110370)
Lingyang Xu (389143)
Junya Li (240083)

March 2019

Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diag...

Additional file 2: of Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

Shinji Sasaki (238265)
Toshio Watanabe (151136)
Shota Nishimura (238266)
Yoshikazu Sugimoto (151140)

January 2016

Detection number and mean size of CNVRs in 3, 5, 10, and 15 consecutive SNP windows. (PPTX 53Â kb

Additional file 5: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

Lingyang Xu (389143)
Liu Yang (23752)
Lei Wang (6656)
Bo Zhu (118038)
Yan Chen (4308)
Huijiang Gao (628320)
Xue Gao (237216)
Lupei Zhang (647384)
George Liu (122581)
Junya Li (240083)

January 2019

Summary of probe-based CNV association analysis results including probe name, chromosome, position, ...

Additional file 2: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the fat yield. Colum...

Additional file 1: of Relevance of polymorphisms in MC4R and BDNF in short normal stature

Nikolas Herrfurth (2141509)
Anna-Lena Volckmar (280948)
Triinu Peters (5677598)
Gunnar Kleinau (103422)
Anne MĂźller (5677616)
Cigdem Cetindag (5677601)
Laura Schonnop (5677604)
Manuel FĂścker (5677619)
Astrid Dempfle (73673)
Stefan Wudy (5677607)
Struan Grant (5677610)
Thomas Reinehr (87546)
Diana Cousminer (5677613)
Johannes Hebebrand (170268)
Heike Biebermann (46078)
Anke Hinney (87545)

August 2018

Table S1. Primers, PCR conditions, fragment sizes and screening methods for LEP, MC4R, MRAP2 and BDN...

Additional file 2: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Yang Zhou (65942)
Erin Connor (3539750)
George Wiggans (392282)
Yongfang Lu (3251994)
Robert Tempelman (5162687)
Steven Schroeder (77597)
Hong Chen (108084)
George Liu (122581)

May 2018

Table S1. Primer information for CNV validation. Table S2. Characteristics of CNV and their overlapp...

Additional file 1: Table S1. of Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

Shinji Sasaki (238265)
Toshio Watanabe (151136)
Shota Nishimura (238266)
Yoshikazu Sugimoto (151140)

January 2016

Characterization of cattle autosomal CNVRs based on previously published studies. Table S2 – Detaile...

Additional file 2: of Array CGH-based detection of CNV regions and their potential association with reproduction and other economic traits in Holsteins

Mei Liu (41760)
Lingzhao Fang (4023761)
Shuli Liu (627105)
Michael Pan (5351486)
Eyal Seroussi (31976)
John Cole (392281)
Li Ma (46633)
Hong Chen (108084)
George Liu (122581)

March 2019

Table S1. CNVRs identified in this study and overlapping with QTL, OMIA, and CNVRs in previous studi...

Additional file 1: of Genomic predictions combining SNP markers and copy number variations in Nellore cattle

El Hay (3540962)
Yuri Utsunomiya (3518468)
Lingyang Xu (389143)
Yang Zhou (65942)
Haroldo Neves (5343551)
Roberto Carvalheiro (523642)
Derek Bickhart (275943)
Li Ma (46633)
Jose Garcia (1371534)
George Liu (122581)

June 2018

Table S1. Detail information of the CNVs detected with high confidence. (XLSX 37 kb

Additional file 2: Table S2. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

Yahui Gao (776538)
Jianping Jiang (149448)
Shaohua Yang (143807)
Yali Hou (252579)
George Liu (122581)
Shengli Zhang (110370)
Qin Zhang (58638)
Dongxiao Sun (155488)

March 2017

Primers information and confirmation results of the 11 chosen CNVRs by qPCR analysis. (XLSX 14Â kb

Additional file 9: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

Joaquim da Silva (3455798)
Poliana Giachetto (3455801)
Luiz da Silva (3455792)
Leandro Cintra (3455804)
Samuel Paiva (184995)
Michel Yamagishi (3455795)
Alexandre Caetano (3455789)

June 2016

CNVRs overlapping with previously detected QTLs from the Bovine QTL Database. (XLSX 2973 kb

Additional file 1: of Novel insights into the genetic basis of buffalo reproductive performance

Jun Li (6494)
Jiajia Liu (345509)
Giuseppe Campanile (529389)
Graham Plastow (174335)
Chunyan Zhang (30676)
Zhiquan Wang (38051)
Martino Cassandro (5448953)
Bianca Gasparrini (529379)
Angela Salzano (5957189)
Guohua Hua (342698)
Aixin Liang (4906621)
Liguo Yang (342702)

November 2018

Table S1. Multiple Comparative Analysis of the relationship between Buffalo Haplotype block and SCA ...

Additional file 1: of First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data

F. Genova (6067403)
M. Longeri (2540983)
L. Lyons (6067412)
A. Bagnato (4221796)
M. Strillacci (4221784)

December 2018

Table S1. (XLSX). Consensus CNVs. List of the consensus list of CNVs detected by both cn.mops and CN...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 2: Table S2-S4. of Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Yiyuan Yan (617469)
Ning Yang (114965)
Hans Cheng (3418421)
Jiuzhou Song (41834)
Lujiang Qu (114956)

October 2015

Summary (Table S2) of successfully converted CNVs (Table S3) and comparison with current study (Tabl...

Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Zezhao Wang (4111030)
Bo Zhu (118038)
Hong Niu (2637253)
Wengang Zhang (3594995)
Ling Xu (117663)
Lei Xu (78676)
Yan Chen (4308)
Lupei Zhang (647384)
Xue Gao (237216)
Huijiang Gao (628320)
Shengli Zhang (110370)
Lingyang Xu (389143)
Junya Li (240083)

March 2019

Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diag...

Additional file 2: of Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

Shinji Sasaki (238265)
Toshio Watanabe (151136)
Shota Nishimura (238266)
Yoshikazu Sugimoto (151140)

January 2016

Detection number and mean size of CNVRs in 3, 5, 10, and 15 consecutive SNP windows. (PPTX 53Â kb

Additional file 5: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

Lingyang Xu (389143)
Liu Yang (23752)
Lei Wang (6656)
Bo Zhu (118038)
Yan Chen (4308)
Huijiang Gao (628320)
Xue Gao (237216)
Lupei Zhang (647384)
George Liu (122581)
Junya Li (240083)

January 2019

Summary of probe-based CNV association analysis results including probe name, chromosome, position, ...

Additional file 2: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the fat yield. Colum...

Additional file 1: of Relevance of polymorphisms in MC4R and BDNF in short normal stature

Nikolas Herrfurth (2141509)
Anna-Lena Volckmar (280948)
Triinu Peters (5677598)
Gunnar Kleinau (103422)
Anne MĂźller (5677616)
Cigdem Cetindag (5677601)
Laura Schonnop (5677604)
Manuel FĂścker (5677619)
Astrid Dempfle (73673)
Stefan Wudy (5677607)
Struan Grant (5677610)
Thomas Reinehr (87546)
Diana Cousminer (5677613)
Johannes Hebebrand (170268)
Heike Biebermann (46078)
Anke Hinney (87545)

August 2018

Table S1. Primers, PCR conditions, fragment sizes and screening methods for LEP, MC4R, MRAP2 and BDN...

Additional file 1: Table S1. of Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

Abstract

Extracted data

Additional file 1: Table S1. of Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

Abstract

Extracted data

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