Unsupervised hierarchical clustering of tumor cells by functional dependency. (A) Grouping of drop-out patterns using outlier genes, where rows correspond to genes and columns correspond to cell lines. Non-outlier genes are colored in grey as they represent non-sensitive hits. The right inset provides a zoom-in view of the yellow cluster with the vast majority of hematological lines. The full size heatmap, dendrograms and labels have been included as Additional file 6. (B) Grouping using outlier genes from the Wnt pathway. (DOCX 1164 kb
Table S1. 48 genes included in the TruSeq Amplicon Cancer Panel (TSACP, Illumina), which includes 21...
Frequency of indels and non-indels in each MAF dataset. Distribution of mutation frequency across MA...
Figure S3. (a, b) The fraction of metabolic genes (whose dependency score in at least one cell line ...
The complete clustering diagram shown in Additional file 5: Figure S2A including heatmap, dendrogram...
The complete list of genes with outlier patterns along with tumor type indication and related predic...
The outlier pattern for APC. (A) The kernel density plot of ATARiS gene level score for APC and deta...
Tumor type and common subtype classification of Achilles cell lines. (XLSX 16 kb
The ATARiS gene level score distribution for (A) EGFR and (B) ERBB2. A probability density estimate ...
Cell lines analysis results. Two tables containing results on cell line data analysis. (XLSX 14 kb
Ensemble outlier detection and gene selection in triple-negative breast cancer data. (XLSX 4010 kb
Figure S4. Oncoprint showing a subset of mutations in OV. Line plots above the oncoprint shows the t...
Results for actionable fusions, details on genetic complexity reduction algorithm, method descriptio...
All supplementary tables merged. 1: List of all identified SiMPRes. 2: All novel genes that contain ...
Unsupervised hierarchal clustering of 50 breast cancer cell lines and 1025 TCGA breast cancer tumour...
Clinical trial BR9601 information. (a) Schematic representation. (b) Patient information. Figure S2....
Table S1. 48 genes included in the TruSeq Amplicon Cancer Panel (TSACP, Illumina), which includes 21...
Frequency of indels and non-indels in each MAF dataset. Distribution of mutation frequency across MA...
Figure S3. (a, b) The fraction of metabolic genes (whose dependency score in at least one cell line ...
The complete clustering diagram shown in Additional file 5: Figure S2A including heatmap, dendrogram...
The complete list of genes with outlier patterns along with tumor type indication and related predic...
The outlier pattern for APC. (A) The kernel density plot of ATARiS gene level score for APC and deta...
Tumor type and common subtype classification of Achilles cell lines. (XLSX 16 kb
The ATARiS gene level score distribution for (A) EGFR and (B) ERBB2. A probability density estimate ...
Cell lines analysis results. Two tables containing results on cell line data analysis. (XLSX 14 kb
Ensemble outlier detection and gene selection in triple-negative breast cancer data. (XLSX 4010 kb
Figure S4. Oncoprint showing a subset of mutations in OV. Line plots above the oncoprint shows the t...
Results for actionable fusions, details on genetic complexity reduction algorithm, method descriptio...
All supplementary tables merged. 1: List of all identified SiMPRes. 2: All novel genes that contain ...
Unsupervised hierarchal clustering of 50 breast cancer cell lines and 1025 TCGA breast cancer tumour...
Clinical trial BR9601 information. (a) Schematic representation. (b) Patient information. Figure S2....
Table S1. 48 genes included in the TruSeq Amplicon Cancer Panel (TSACP, Illumina), which includes 21...
Frequency of indels and non-indels in each MAF dataset. Distribution of mutation frequency across MA...
Figure S3. (a, b) The fraction of metabolic genes (whose dependency score in at least one cell line ...