MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

MOESM8 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 8: Table S5. Coverage and methylation evidence for common CpGs (covered in common be...

Epigenetic dynamics of monocyte-to-macrophage differentiation

Wallner, S.
Schröder, C.
Leitão, E.
Berulava, T.
Haak, C.
Beißer, D.
Rahmann, S.
Richter, A.
Manke, T.
Bönisch, U.
Arrigoni, L.
Fröhler, S.
Klironomos, F.
Chen, W.
Rajewsky, N.
Müller, F.
Ebert, P.
Lengauer, T.
Barann, M.
Rosenstiel, P.
Gasparoni, G.
Nordström, K.
Walter, J.
Brors, B.
Zipprich, G.
Felder, B.
Klein-Hitpass, L.
Attenberger, C.
Schmitz, G.
Horsthemke, B.

January 2016

Background Monocyte-to-macrophage differentiation involves major biochemical and structural changes....

MOESM8 of Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with the Dlk1/Gtl2 imprinting cluster in mouse

Megan Guntrum (4166659)
Ekaterina Vlasova (4166653)
Tamara Davis (4166656)

June 2017

Additional file 8: Table S7. Primers and PCR cycling conditions for 5-hmC analyses

MOESM7 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 7: Figure S4. Distance of DMRs to the transcription start sites (TSS) of their assoc...

MOESM1 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 1: Figure S1. Scatter plot of the mean log2 fold changes obtained by BLUEPRINT for t...

MOESM9 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 9. Methylation differences vs. changes in chromatin state. Distribution of DNA methy...

MOESM12 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 12. List of DMRs with correlated SNPs in 12 kb window. SNPs within the same haplotyp...

MOESM17 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 17. Manhattan plots of GWASs. Dashed vertical line DMR position. Horizontal line GWA...

MOESM18 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 18. Zoom-ins with imputed SNPs. Blue lead-SNP. Dashed vertical line DMR position. Ho...

MOESM14 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 14: Table S7. Characteristics of pairwise comparisons for large DMR block analysis

MOESM4 of Retinal-input-induced epigenetic dynamics in the developing mouse dorsal lateral geniculate nucleus

Jianlin He (4989536)
Xiguang Xu (4989533)
Aboozar Monavarfeshani (422992)
Sharmi Banerjee (3697303)
Michael Fox (3577643)
Hehuang Xie (7251)

February 2019

Additional file 4: Table S3. Summary of DMRs and GO enrichment analysis for genes associated with DM...

Additional file 5: Table S4. of Genomic Clustering of differential DNA methylated regions (epimutations) associated with the epigenetic transgenerational inheritance of disease and phenotypic variation

M. Haque (3526286)
Eric Nilsson (166681)
Lawrence Holder (3526283)
Michael Skinner (3526289)

June 2016

Granulosa DMR clusters. DMR clusters with start-end, statistical significance for each DMR with star...

MOESM15 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 15: Table S8. (A) Features of large differentially methylated blocks in germ cells. ...

MOESM2 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 2: Table S1. List of statistically significantly overrepresented GO terms (GO biolog...

Additional file 2 of An epigenetic and transcriptomic signature of immune tolerance in human monocytes through multi-omics integration

Xanthe Brands (8802716)
Bastiaan W. Haak (8802719)
Augustijn M. Klarenbeek (8802722)
Joe Butler (4331395)
Fabrice Uhel (3682579)
Wanhai Qin (10515966)
Natasja A. Otto (8802725)
Marja E. Jakobs (11282828)
Daniël R. Faber (8802728)
René Lutter (3407615)
W. Joost Wiersinga (8802734)
Tom van der Poll (33907)
Brendon P. Scicluna (8802731)

August 2021

Additional file 2: Supplementary figures (Fig. S1 – S5). Fig. S1: Flow cytometry analysis of purifie...

MOESM8 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 8: Table S5. Coverage and methylation evidence for common CpGs (covered in common be...

Epigenetic dynamics of monocyte-to-macrophage differentiation

Wallner, S.
Schröder, C.
Leitão, E.
Berulava, T.
Haak, C.
Beißer, D.
Rahmann, S.
Richter, A.
Manke, T.
Bönisch, U.
Arrigoni, L.
Fröhler, S.
Klironomos, F.
Chen, W.
Rajewsky, N.
Müller, F.
Ebert, P.
Lengauer, T.
Barann, M.
Rosenstiel, P.
Gasparoni, G.
Nordström, K.
Walter, J.
Brors, B.
Zipprich, G.
Felder, B.
Klein-Hitpass, L.
Attenberger, C.
Schmitz, G.
Horsthemke, B.

January 2016

Background Monocyte-to-macrophage differentiation involves major biochemical and structural changes....

MOESM8 of Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with the Dlk1/Gtl2 imprinting cluster in mouse

Megan Guntrum (4166659)
Ekaterina Vlasova (4166653)
Tamara Davis (4166656)

June 2017

Additional file 8: Table S7. Primers and PCR cycling conditions for 5-hmC analyses

MOESM7 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 7: Figure S4. Distance of DMRs to the transcription start sites (TSS) of their assoc...

MOESM1 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 1: Figure S1. Scatter plot of the mean log2 fold changes obtained by BLUEPRINT for t...

MOESM9 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 9. Methylation differences vs. changes in chromatin state. Distribution of DNA methy...

MOESM12 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 12. List of DMRs with correlated SNPs in 12 kb window. SNPs within the same haplotyp...

MOESM17 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 17. Manhattan plots of GWASs. Dashed vertical line DMR position. Horizontal line GWA...

MOESM18 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 18. Zoom-ins with imputed SNPs. Blue lead-SNP. Dashed vertical line DMR position. Ho...

MOESM14 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 14: Table S7. Characteristics of pairwise comparisons for large DMR block analysis

MOESM4 of Retinal-input-induced epigenetic dynamics in the developing mouse dorsal lateral geniculate nucleus

Jianlin He (4989536)
Xiguang Xu (4989533)
Aboozar Monavarfeshani (422992)
Sharmi Banerjee (3697303)
Michael Fox (3577643)
Hehuang Xie (7251)

February 2019

Additional file 4: Table S3. Summary of DMRs and GO enrichment analysis for genes associated with DM...

Additional file 5: Table S4. of Genomic Clustering of differential DNA methylated regions (epimutations) associated with the epigenetic transgenerational inheritance of disease and phenotypic variation

M. Haque (3526286)
Eric Nilsson (166681)
Lawrence Holder (3526283)
Michael Skinner (3526289)

June 2016

Granulosa DMR clusters. DMR clusters with start-end, statistical significance for each DMR with star...

MOESM15 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 15: Table S8. (A) Features of large differentially methylated blocks in germ cells. ...

MOESM2 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 2: Table S1. List of statistically significantly overrepresented GO terms (GO biolog...

Additional file 2 of An epigenetic and transcriptomic signature of immune tolerance in human monocytes through multi-omics integration

Xanthe Brands (8802716)
Bastiaan W. Haak (8802719)
Augustijn M. Klarenbeek (8802722)
Joe Butler (4331395)
Fabrice Uhel (3682579)
Wanhai Qin (10515966)
Natasja A. Otto (8802725)
Marja E. Jakobs (11282828)
Daniël R. Faber (8802728)
René Lutter (3407615)
W. Joost Wiersinga (8802734)
Tom van der Poll (33907)
Brendon P. Scicluna (8802731)

August 2021

Additional file 2: Supplementary figures (Fig. S1 – S5). Fig. S1: Flow cytometry analysis of purifie...

MOESM8 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 8: Table S5. Coverage and methylation evidence for common CpGs (covered in common be...

Epigenetic dynamics of monocyte-to-macrophage differentiation

Wallner, S.
Schröder, C.
Leitão, E.
Berulava, T.
Haak, C.
Beißer, D.
Rahmann, S.
Richter, A.
Manke, T.
Bönisch, U.
Arrigoni, L.
Fröhler, S.
Klironomos, F.
Chen, W.
Rajewsky, N.
Müller, F.
Ebert, P.
Lengauer, T.
Barann, M.
Rosenstiel, P.
Gasparoni, G.
Nordström, K.
Walter, J.
Brors, B.
Zipprich, G.
Felder, B.
Klein-Hitpass, L.
Attenberger, C.
Schmitz, G.
Horsthemke, B.

January 2016

Background Monocyte-to-macrophage differentiation involves major biochemical and structural changes....

MOESM8 of Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with the Dlk1/Gtl2 imprinting cluster in mouse

Megan Guntrum (4166659)
Ekaterina Vlasova (4166653)
Tamara Davis (4166656)

June 2017

Additional file 8: Table S7. Primers and PCR cycling conditions for 5-hmC analyses

MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Abstract

Extracted data

MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Abstract

Extracted data

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