MOESM17 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

MOESM3 of Depletion of DNMT1 in differentiated human cells highlights key classes of sensitive genes and an interplay with polycomb repression

Karla OâNeill (3477248)
Rachelle Irwin (3477233)
Sarah-Jayne Mackin (3477227)
Sara-Jayne Thursby (5041532)
Avinash Thakur (3477230)
Ciske Bertens (5041526)
Laura Masala (5041523)
Jayne Loughery (5041529)
Darragh McArt (3426779)
Colum Walsh (3477236)

March 2018

Additional file 3: Figure S2. Changes in methylation levels by genomic element. (A) Protein levels i...

MOESM12 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 12: Figure S7. (A) Box-and-whisker plot of DNA methylation levels across promoters a...

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis-3

Eleni M Tomazou (77342)
Vardhman K Rakyan (5233)
Gregory Lefebvre (77343)
Robert Andrews (30281)
Peter Ellis (15708)
David K Jackson (77344)
Cordelia Langford (77345)
Matthew D Francis (77346)
Liselotte Bäckdahl (77347)
Marcos Miretti (77348)
Penny Coggill (16745)
Diego Ottaviani (77349)
Denise Sheer (77350)
Adele Murrell (77351)
Stephan Beck (5246)

December 2011

-value < 0.001 was used. In total 90 tDMRs were identified. Vertical axis shows the logratio of the ...

MOESM18 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 18. Zoom-ins with imputed SNPs. Blue lead-SNP. Dashed vertical line DMR position. Ho...

MOESM12 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 12. List of DMRs with correlated SNPs in 12 kb window. SNPs within the same haplotyp...

MOESM9 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 9. Methylation differences vs. changes in chromatin state. Distribution of DNA methy...

MOESM19 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 19. HaploReg annotations of the 30 lead-SNP and SNPs in the corresponding haplotype ...

Regions of common inter‑individual DNA methylation differences in human monocytes: genetic basis and potential function

Schröder, Christopher
Leitão, Elsa
Wallner, Stefan
Schmitz, Gerd
Klein-Hitpass, Ludger
Sinha, Anupam
Jöckel, Karl-Heinz
Heilmann-Heimbach, Stefanie
Hoffmann, Per
Nöthen, Markus M.
Ebert, Peter
Rahmann, Sven
Horsthemke, Bernhard
Steffens, Michael

January 2017

BACKGROUND: There is increasing evidence for inter-individual methylation differences at CpG dinucle...

MOESM1 of Characterization of whole-genome autosomal differences of DNA methylation between men and women

Paula Singmann (240112)
Doron Shem-Tov (580330)
Simone Wahl (112749)
Harald Grallert (72666)
Giovanni Fiorito (136942)
So-Youn Shin (108976)
Katharina Schramm (528479)
Petra Wolf (436851)
Sonja Kunze (2577397)
Yael Baran (332633)
Simonetta Guarrera (136940)
Paolo Vineis (115119)
Vittorio Krogh (140072)
Salvatore Panico (115120)
Rosario Tumino (43188)
Anja Kretschmer (3337692)
Christian Gieger (87555)
Annette Peters (62601)
Holger Prokisch (26590)
Caroline Relton (3457379)
Giuseppe Matullo (136983)
Thomas Illig (44906)
Melanie Waldenberger (236985)
Eran Halperin (22303)

October 2015

Additional file 1. Flow-chart of the studies and analyses. The figure provides an overview of the an...

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder
Elsa Leitão
Stefan Wallner
Gerd Schmitz
Ludger Klein-Hitpass
Anupam Sinha
Karl-Heinz Jöckel
Stefanie Heilmann-Heimbach
Per Hoffmann
Markus M. Nöthen
Michael Steffens
Peter Ebert
Sven Rahmann
Bernhard Horsthemke

July 2017

Abstract Background There is increasing evidence for inter-individual methylation differences at CpG...

MOESM15 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 15: Table S8. (A) Features of large differentially methylated blocks in germ cells. ...

MOESM1 of Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs

Jenny van Dongen (109719)
Erik Ehli (5791733)
Rick Jansen (198642)
Catharina van Beijsterveldt (5791736)
Gonneke Willemsen (75573)
Jouke Hottenga (3404246)
Noah Kallsen (5791739)
Shanna Peyton (5791742)
Charles Breeze (3512645)
Cornelis Kluft (718929)
Bastiaan Heijmans (3404276)
Meike Bartels (109714)
Gareth Davies (679965)
Dorret Boomsma (39586)

September 2018

Additional file 1. Table S1: MZ twin correlations for DNA methylation level at all autosomal methyla...

MOESM6 of Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions

Harald Oey (2203522)
Luke Isbel (2203525)
Peter Hickey (3484085)
Basant Ebaid (3484082)
Emma Whitelaw (15971)

December 2015

Additional file 6: Fig. S5. Validation of DNA methylation at random non-ERV iiDMRs. WGBS weighted av...

MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 5: Table S3. Overview over all identified DMRs and their characteristics

MOESM7 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 7: Figure S4. Distance of DMRs to the transcription start sites (TSS) of their assoc...

MOESM3 of Depletion of DNMT1 in differentiated human cells highlights key classes of sensitive genes and an interplay with polycomb repression

Karla OâNeill (3477248)
Rachelle Irwin (3477233)
Sarah-Jayne Mackin (3477227)
Sara-Jayne Thursby (5041532)
Avinash Thakur (3477230)
Ciske Bertens (5041526)
Laura Masala (5041523)
Jayne Loughery (5041529)
Darragh McArt (3426779)
Colum Walsh (3477236)

March 2018

Additional file 3: Figure S2. Changes in methylation levels by genomic element. (A) Protein levels i...

MOESM12 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 12: Figure S7. (A) Box-and-whisker plot of DNA methylation levels across promoters a...

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis-3

Eleni M Tomazou (77342)
Vardhman K Rakyan (5233)
Gregory Lefebvre (77343)
Robert Andrews (30281)
Peter Ellis (15708)
David K Jackson (77344)
Cordelia Langford (77345)
Matthew D Francis (77346)
Liselotte Bäckdahl (77347)
Marcos Miretti (77348)
Penny Coggill (16745)
Diego Ottaviani (77349)
Denise Sheer (77350)
Adele Murrell (77351)
Stephan Beck (5246)

December 2011

-value < 0.001 was used. In total 90 tDMRs were identified. Vertical axis shows the logratio of the ...

MOESM18 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 18. Zoom-ins with imputed SNPs. Blue lead-SNP. Dashed vertical line DMR position. Ho...

MOESM12 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 12. List of DMRs with correlated SNPs in 12 kb window. SNPs within the same haplotyp...

MOESM9 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 9. Methylation differences vs. changes in chromatin state. Distribution of DNA methy...

MOESM19 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder (3530960)
Elsa Leitão (3530942)
Stefan Wallner (548742)
Gerd Schmitz (44452)
Ludger Klein-Hitpass (133366)
Anupam Sinha (1974100)
Karl-Heinz Jöckel (15194)
Stefanie Heilmann-Heimbach (3280875)
Per Hoffmann (429526)
Markus Nöthen (4279438)
Michael Steffens (4279411)
Peter Ebert (3530948)
Sven Rahmann (2715)
Bernhard Horsthemke (116259)

July 2017

Additional file 19. HaploReg annotations of the 30 lead-SNP and SNPs in the corresponding haplotype ...

Regions of common inter‑individual DNA methylation differences in human monocytes: genetic basis and potential function

Schröder, Christopher
Leitão, Elsa
Wallner, Stefan
Schmitz, Gerd
Klein-Hitpass, Ludger
Sinha, Anupam
Jöckel, Karl-Heinz
Heilmann-Heimbach, Stefanie
Hoffmann, Per
Nöthen, Markus M.
Ebert, Peter
Rahmann, Sven
Horsthemke, Bernhard
Steffens, Michael

January 2017

BACKGROUND: There is increasing evidence for inter-individual methylation differences at CpG dinucle...

MOESM1 of Characterization of whole-genome autosomal differences of DNA methylation between men and women

Paula Singmann (240112)
Doron Shem-Tov (580330)
Simone Wahl (112749)
Harald Grallert (72666)
Giovanni Fiorito (136942)
So-Youn Shin (108976)
Katharina Schramm (528479)
Petra Wolf (436851)
Sonja Kunze (2577397)
Yael Baran (332633)
Simonetta Guarrera (136940)
Paolo Vineis (115119)
Vittorio Krogh (140072)
Salvatore Panico (115120)
Rosario Tumino (43188)
Anja Kretschmer (3337692)
Christian Gieger (87555)
Annette Peters (62601)
Holger Prokisch (26590)
Caroline Relton (3457379)
Giuseppe Matullo (136983)
Thomas Illig (44906)
Melanie Waldenberger (236985)
Eran Halperin (22303)

October 2015

Additional file 1. Flow-chart of the studies and analyses. The figure provides an overview of the an...

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Christopher Schröder
Elsa Leitão
Stefan Wallner
Gerd Schmitz
Ludger Klein-Hitpass
Anupam Sinha
Karl-Heinz Jöckel
Stefanie Heilmann-Heimbach
Per Hoffmann
Markus M. Nöthen
Michael Steffens
Peter Ebert
Sven Rahmann
Bernhard Horsthemke

July 2017

Abstract Background There is increasing evidence for inter-individual methylation differences at CpG...

MOESM15 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 15: Table S8. (A) Features of large differentially methylated blocks in germ cells. ...

MOESM1 of Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs

Jenny van Dongen (109719)
Erik Ehli (5791733)
Rick Jansen (198642)
Catharina van Beijsterveldt (5791736)
Gonneke Willemsen (75573)
Jouke Hottenga (3404246)
Noah Kallsen (5791739)
Shanna Peyton (5791742)
Charles Breeze (3512645)
Cornelis Kluft (718929)
Bastiaan Heijmans (3404276)
Meike Bartels (109714)
Gareth Davies (679965)
Dorret Boomsma (39586)

September 2018

Additional file 1. Table S1: MZ twin correlations for DNA methylation level at all autosomal methyla...

MOESM6 of Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions

Harald Oey (2203522)
Luke Isbel (2203525)
Peter Hickey (3484085)
Basant Ebaid (3484082)
Emma Whitelaw (15971)

December 2015

Additional file 6: Fig. S5. Validation of DNA methylation at random non-ERV iiDMRs. WGBS weighted av...

MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 5: Table S3. Overview over all identified DMRs and their characteristics

MOESM7 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner (548742)
Christopher Schröder (3530960)
Elsa Leitão (3530942)
Tea Berulava (255420)
Claudia Haak (3530936)
Daniela Beißer (3530945)
Sven Rahmann (2715)
Andreas Richter (87142)
Thomas Manke (43376)
Ulrike Bönisch (154655)
Laura Arrigoni (3530966)
Sebastian Fröhler (3530957)
Filippos Klironomos (3530951)
Wei Chen (23863)
Nikolaus Rajewsky (3246)
Fabian Müller (30745)
Peter Ebert (3530948)
Thomas Lengauer (14699)
Matthias Barann (186304)
Philip Rosenstiel (68103)
Gilles Gasparoni (646130)
Karl Nordström (3530954)
Jörn Walter (37094)
Benedikt Brors (14082)
Gideon Zipprich (3530963)
Bärbel Felder (3530939)
Ludger Klein-Hitpass (133366)
Corinna Attenberger (3530969)
Gerd Schmitz (44452)
Bernhard Horsthemke (116259)

July 2016

Additional file 7: Figure S4. Distance of DMRs to the transcription start sites (TSS) of their assoc...

MOESM3 of Depletion of DNMT1 in differentiated human cells highlights key classes of sensitive genes and an interplay with polycomb repression

Karla OâNeill (3477248)
Rachelle Irwin (3477233)
Sarah-Jayne Mackin (3477227)
Sara-Jayne Thursby (5041532)
Avinash Thakur (3477230)
Ciske Bertens (5041526)
Laura Masala (5041523)
Jayne Loughery (5041529)
Darragh McArt (3426779)
Colum Walsh (3477236)

March 2018

Additional file 3: Figure S2. Changes in methylation levels by genomic element. (A) Protein levels i...

MOESM12 of Transient reduction of DNA methylation at the onset of meiosis in male mice

Valeriya Gaysinskaya (5060423)
Brendan Miller (5060426)
Chiara Luca (5060429)
Godfried Heijden (3831364)
Kasper Hansen (227413)
Alex Bortvin (256348)

April 2018

Additional file 12: Figure S7. (A) Box-and-whisker plot of DNA methylation levels across promoters a...

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis-3

Eleni M Tomazou (77342)
Vardhman K Rakyan (5233)
Gregory Lefebvre (77343)
Robert Andrews (30281)
Peter Ellis (15708)
David K Jackson (77344)
Cordelia Langford (77345)
Matthew D Francis (77346)
Liselotte Bäckdahl (77347)
Marcos Miretti (77348)
Penny Coggill (16745)
Diego Ottaviani (77349)
Denise Sheer (77350)
Adele Murrell (77351)
Stephan Beck (5246)

December 2011

-value < 0.001 was used. In total 90 tDMRs were identified. Vertical axis shows the logratio of the ...

MOESM17 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Abstract

Extracted data

MOESM17 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Abstract

Extracted data

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