Visualization in 2D of Map and Paths Computed for H-Ras G12S. The computed map for the H-Ras G12S variant is projected onto 2D and projections are color-coded by Rosetta score12 energy values. Low-cost paths (costs in REUs are listed) modeling the On âOff structural excursion are also drawn. The projections of experimentally-known structures on the top two PCs are related by showing whether the structures are captured in the wet laboratory for the WT or variants. (PDF 1597 kb
Quality of predicted structures using the original weights and the optimized weights of energy terms...
The purpose of this project is to enable high-quality visualization of the primary data from protein...
Reactions, metabolites, the BSR and elementary modes of the reduced Synechocystis model (Synechocyst...
Visualization in 2D of map and paths computed for H-Ras G12V. The computed map for the H-Ras G12V va...
Visualization in 2D of map and paths computed for H-Ras R164AQ165V. The computed map for the H-Ras R...
Comparison of lowest-cost off âon path across H-Ras WT and variants. Column 1 lists the different ...
Comparison of ensemble of low-cost off âon paths across H-Ras WT and variants. Column 1 lists the ...
<p>The energy landscape associated with functional conformations generated by SIfTER for WT H-Ras is...
Source files for Figures 1F, 2, and 8 in the manuscript "Mapping the conformational landscape of the...
Using the PathMolD-AB software, four datasets of protein folding trajectories were produced as case ...
The development of an integrated software environment for protein structure refinement is reported. ...
<p>Obtained Rosetta and AMBER energy landscapes are shown for WT, G12V, and Q61L H-Ras. The location...
Figure S2. Jaccard index plot showing the coefficient distances for the HPs. The x-axis indicates th...
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic fold-ing behavior ...
<p>(A) The H protein structure is shown as ribbon diagram. The front halves of the H structure and t...
Quality of predicted structures using the original weights and the optimized weights of energy terms...
The purpose of this project is to enable high-quality visualization of the primary data from protein...
Reactions, metabolites, the BSR and elementary modes of the reduced Synechocystis model (Synechocyst...
Visualization in 2D of map and paths computed for H-Ras G12V. The computed map for the H-Ras G12V va...
Visualization in 2D of map and paths computed for H-Ras R164AQ165V. The computed map for the H-Ras R...
Comparison of lowest-cost off âon path across H-Ras WT and variants. Column 1 lists the different ...
Comparison of ensemble of low-cost off âon paths across H-Ras WT and variants. Column 1 lists the ...
<p>The energy landscape associated with functional conformations generated by SIfTER for WT H-Ras is...
Source files for Figures 1F, 2, and 8 in the manuscript "Mapping the conformational landscape of the...
Using the PathMolD-AB software, four datasets of protein folding trajectories were produced as case ...
The development of an integrated software environment for protein structure refinement is reported. ...
<p>Obtained Rosetta and AMBER energy landscapes are shown for WT, G12V, and Q61L H-Ras. The location...
Figure S2. Jaccard index plot showing the coefficient distances for the HPs. The x-axis indicates th...
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic fold-ing behavior ...
<p>(A) The H protein structure is shown as ribbon diagram. The front halves of the H structure and t...
Quality of predicted structures using the original weights and the optimized weights of energy terms...
The purpose of this project is to enable high-quality visualization of the primary data from protein...
Reactions, metabolites, the BSR and elementary modes of the reduced Synechocystis model (Synechocyst...