Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

Publication date

September 2016

DOI

10.6084/m9.figshare.c.3609497_d7.v1

Abstract

Logistic regression analysis of HPV and HPVÂ + three-gene methylation markers for predicting for HSIL cytology. (PDF 154 kb

Extracted data

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Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

Open link

Publication date

September 2016

DOI

10.6084/m9.figshare.c.3609497_d7.v1

Abstract

Logistic regression analysis of HPV and HPVÂ + three-gene methylation markers for predicting for HSIL cytology. (PDF 154 kb

Extracted data

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Boers, A.
Wang, R.
van Leeuwen, Leeuwen R.W.
Klip, H.G.
de Bock, Bock G.H.
Hollema, H.
van Criekinge, Criekinge W.
de Meyer, Meyer T.
Denil, S.
van der Zee, der Zee A.G.J.
Schuuring, E.
Wisman, Bea
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Arctic Centre, Univ. of Groningen
Ghent University

January 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 9: Table S8. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Diagnostic performance of HPV vs. HPVÂ + three-gene methylation markers for HSIL cytology. (PDF 152 ...

Additional file 7: Table S6. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Predictive margins for HSIL cytology based on HPV or HPVÂ + three-gene methylation markers. (PDF 196...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 4: Table S2. of Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers

Yenkai Lim (3506762)
Yunxia Wan (301085)
Dimitrios Vagenas (3522221)
Dmitry Ovchinnikov (1332042)
Chris Perry (215362)
Melissa Davis (3522224)
Chamindie Punyadeera (301091)

September 2016

Methylation ratio data file. The raw data generated for this study. Each table contains the band int...

Additional file 1: Table S1. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping results for 60 formalin-fixed and paraffin embedded (FFPE) spe...

Additional file 2: Table S2. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping reproducibility for 6 formalin-fixed and paraffin embedded (FF...

Additional file 1: of HPV-16, HPV-58, and HPV-33 are the most carcinogenic HPV genotypes in Southwestern China and their viral loads are associated with severity of premalignant lesions in the cervix

Wenbo Long (493445)
Zixi Yang (5290553)
Xiabin Li (5290559)
Ming Chen (115604)
Jie Liu (15128)
Yuanxue Zhang (5290550)
Xingwang Sun (5290556)

May 2018

Table S1. Original data of final diagnoses and quantitative PCR identification. (XLS 902 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

A. Boers (3571280)
R. Wang (820652)
R. van Leeuwen (3571292)
H. Klip (3571283)
G. de Bock (3571277)
H. Hollema (3571289)
W. van Criekinge (2866907)
T. de Meyer (2866910)
S. Denil (2866913)
A. van der Zee (3571286)
E. Schuuring (775508)
G. Wisman (3563516)

March 2016

Identified DMRâs with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Boers, A.
Wang, R.
van Leeuwen, Leeuwen R.W.
Klip, H.G.
de Bock, Bock G.H.
Hollema, H.
van Criekinge, Criekinge W.
de Meyer, Meyer T.
Denil, S.
van der Zee, der Zee A.G.J.
Schuuring, E.
Wisman, Bea
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Arctic Centre, Univ. of Groningen
Ghent University

January 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Molecular analysis of human Papillomavirus detected among women positive for cervical lesions by visual inspection with acetic acid/Lugolâs iodine (VIA/VILI) in Libreville, Gabon

Pamela Moussavou (3404597)
IsmaĂŤl Koumakpayi (3404618)
Andriniaina Nkili-Meyong (3398633)
Ingrid Labouba (159598)
Ulrich Bisvigou (184038)
Junie Chansi (3404603)
Corinne Engohan-Aloghe (3404609)
Frederic Dissanami (3404615)
Nathalie Ambounda (3404594)
Anne-Sophie Delannoy-Vieillard (3404612)
Laure Diancourt (163898)
Dieudonne Nkoghe (3404600)
Eric Leroy (264004)
Ernest Belembaogo (3404606)
Nicolas Berthet (234813)

September 2016

List of PCR primers sequences used. Table S2. Identified HPV genotypes per samples. (DOCX 287Â kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Boers, A.
Wang, R.
van Leeuwen, Leeuwen R.W.
Klip, H.G.
de Bock, Bock G.H.
Hollema, H.
van Criekinge, Criekinge W.
de Meyer, Meyer T.
Denil, S.
van der Zee, der Zee A.G.J.
Schuuring, E.
Wisman, Bea
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Arctic Centre, Univ. of Groningen
Ghent University

January 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 9: Table S8. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Diagnostic performance of HPV vs. HPVÂ + three-gene methylation markers for HSIL cytology. (PDF 152 ...

Additional file 7: Table S6. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Predictive margins for HSIL cytology based on HPV or HPVÂ + three-gene methylation markers. (PDF 196...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 4: Table S2. of Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers

Yenkai Lim (3506762)
Yunxia Wan (301085)
Dimitrios Vagenas (3522221)
Dmitry Ovchinnikov (1332042)
Chris Perry (215362)
Melissa Davis (3522224)
Chamindie Punyadeera (301091)

September 2016

Methylation ratio data file. The raw data generated for this study. Each table contains the band int...

Additional file 1: Table S1. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping results for 60 formalin-fixed and paraffin embedded (FFPE) spe...

Additional file 2: Table S2. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping reproducibility for 6 formalin-fixed and paraffin embedded (FF...

Additional file 1: of HPV-16, HPV-58, and HPV-33 are the most carcinogenic HPV genotypes in Southwestern China and their viral loads are associated with severity of premalignant lesions in the cervix

Wenbo Long (493445)
Zixi Yang (5290553)
Xiabin Li (5290559)
Ming Chen (115604)
Jie Liu (15128)
Yuanxue Zhang (5290550)
Xingwang Sun (5290556)

May 2018

Table S1. Original data of final diagnoses and quantitative PCR identification. (XLS 902 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

A. Boers (3571280)
R. Wang (820652)
R. van Leeuwen (3571292)
H. Klip (3571283)
G. de Bock (3571277)
H. Hollema (3571289)
W. van Criekinge (2866907)
T. de Meyer (2866910)
S. Denil (2866913)
A. van der Zee (3571286)
E. Schuuring (775508)
G. Wisman (3563516)

March 2016

Identified DMRâs with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Boers, A.
Wang, R.
van Leeuwen, Leeuwen R.W.
Klip, H.G.
de Bock, Bock G.H.
Hollema, H.
van Criekinge, Criekinge W.
de Meyer, Meyer T.
Denil, S.
van der Zee, der Zee A.G.J.
Schuuring, E.
Wisman, Bea
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Arctic Centre, Univ. of Groningen
Ghent University

January 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Pamela Moussavou (3404597)
IsmaĂŤl Koumakpayi (3404618)
Andriniaina Nkili-Meyong (3398633)
Ingrid Labouba (159598)
Ulrich Bisvigou (184038)
Junie Chansi (3404603)
Corinne Engohan-Aloghe (3404609)
Frederic Dissanami (3404615)
Nathalie Ambounda (3404594)
Anne-Sophie Delannoy-Vieillard (3404612)
Laure Diancourt (163898)
Dieudonne Nkoghe (3404600)
Eric Leroy (264004)
Ernest Belembaogo (3404606)
Nicolas Berthet (234813)

September 2016

List of PCR primers sequences used. Table S2. Identified HPV genotypes per samples. (DOCX 287Â kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Boers, A.
Wang, R.
van Leeuwen, Leeuwen R.W.
Klip, H.G.
de Bock, Bock G.H.
Hollema, H.
van Criekinge, Criekinge W.
de Meyer, Meyer T.
Denil, S.
van der Zee, der Zee A.G.J.
Schuuring, E.
Wisman, Bea
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Arctic Centre, Univ. of Groningen
Ghent University

January 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

Klip, Harry
Schuurs-Wisman, Bea
Leeuwen ,van, Robert
Schuuring, Ed
de Bock, Truuske
van der Zee, Ate
van Criekinge
Boers
Hollema
de Meyer
Denil
Targeted Gynaecologic Oncology (TARGON)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Ghent University

March 2016

Identified DMRâ s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb

Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Abstract

Extracted data

Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Abstract

Extracted data

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