Additional file 1: Table S1. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Additional file 1: of Performance of 6 HCV genotyping 9G test for HCV genotyping in clinical samples

Shrikant Warkad (5506367)
Satish Nimse (5506361)
Keum-Soo Song (5506370)
Wasun Chantratita (721243)
Viroj Pongthanapisith (5506358)
Laxman Nawale (688601)
Taisun Kim (5506364)

July 2018

Table S1. Comparison of 6 HCV Genotyping 9G Test and LiPA 2.0 with the sequencing in 46 discordant s...

Additional file 3: Table S3. of A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16INK4a expression in head and neck squamous cell carcinoma patients

Ryan Chai (3506759)
Yenkai Lim (3506762)
Ian Frazer (3506765)
Yunxia Wan (301085)
Christopher Perry (377554)
Lee Jones (1473259)
Duncan Lambie (3506768)
Chamindie Punyadeera (301091)

March 2016

Summary of results for the detection of HPV-16-specific DNA and RNA in oral rinse of patients with p...

Additional file 2: of Universal human papillomavirus typing by whole genome sequencing following target enrichment: evaluation of assay reproducibility and limit of detection

Tengguo Li (226758)
Elizabeth Unger (4896934)
Mangalathu Rajeevan (4896931)

March 2019

Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...

Additional file 2: Table S2. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping reproducibility for 6 formalin-fixed and paraffin embedded (FF...

Additional file 1: Table S1. of Molecular analysis of human Papillomavirus detected among women positive for cervical lesions by visual inspection with acetic acid/Lugolâs iodine (VIA/VILI) in Libreville, Gabon

Pamela Moussavou (3404597)
IsmaĂŤl Koumakpayi (3404618)
Andriniaina Nkili-Meyong (3398633)
Ingrid Labouba (159598)
Ulrich Bisvigou (184038)
Junie Chansi (3404603)
Corinne Engohan-Aloghe (3404609)
Frederic Dissanami (3404615)
Nathalie Ambounda (3404594)
Anne-Sophie Delannoy-Vieillard (3404612)
Laure Diancourt (163898)
Dieudonne Nkoghe (3404600)
Eric Leroy (264004)
Ernest Belembaogo (3404606)
Nicolas Berthet (234813)

September 2016

List of PCR primers sequences used. Table S2. Identified HPV genotypes per samples. (DOCX 287Â kb

Additional file 1: of Comparison of the Roche cobasÂŽ 4800 and Digene Hybrid CaptureÂŽ 2 HPV tests for primary cervical cancer screening in the HPV FOCAL trial

Darrel Cook (2556787)
Wendy Mei (3515411)
Laurie Smith (3515405)
Dirk van Niekerk (31724)
Kathy Ceballos (3515408)
Eduardo Franco (3423452)
Andrew Coldman (3515402)
Gina Ogilvie (365071)
Mel Krajden (480863)

December 2015

Table S1. Baseline Digene HC2/Roche COBAS Results Stratified by LA and Cytology. Table S2. Baseline ...

Additional file 9: Table S8. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Diagnostic performance of HPV vs. HPVÂ + three-gene methylation markers for HSIL cytology. (PDF 152 ...

Additional file 1 of Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples

Catia Sias (6423164)
Leonidas Salichos (224738)
Daniele Lapa (357286)
Franca Nonno (6423167)
Andrea Baiocchini (2575345)
Maria Capobianchi (3409547)
Anna Garbuglia (6423170)

March 2019

Table S1 Study population characteristics of HIV infected patients. (DOCX 14âkb

Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Logistic regression analysis of HPV and HPVÂ + three-gene methylation markers for predicting for HSI...

Additional file 7: Table S6. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Predictive margins for HSIL cytology based on HPV or HPVÂ + three-gene methylation markers. (PDF 196...

Additional file 1: of Low-cost HPV testing and the prevalence of cervical infection in asymptomatic populations in Guatemala

Hong Lou (2477365)
Eduardo Gharzouzi (5225150)
Sarita Guerra (5225129)
Joël Domgue (5225141)
Julie Sawitzke (136636)
Guillermo Villagran (5225159)
Lisa Garland (5225162)
Joseph Boland (451619)
Sarah Wagner (836148)
Héctor Rosas (5225153)
Jami Troxler (5225135)
Heidi McMillen (5225156)
Bailey Kessing (115867)
Enrique Alvirez (5225126)
Miriam Castillo (5225144)
Hesler Morales (5225138)
Victor Argueta (5225168)
Andert Rosingh (5225165)
Femke van Aerde-van Nunen (5225147)
Griselda Lopez (4434367)
Herbert Pinedo (5225132)
Mark Schiffman (106112)
Michael Dean (17049)
Roberto Orozco (5225171)

May 2018

Figure S1. Amplification of HPV positive and negative cell line genomic DNA by Touchdown PCR using B...

Additional file 3: Table S3. of Prevalence and distribution of cervical high-risk human papillomavirus and cytological abnormalities in women living with HIV in Denmark â the SHADE

Kristina Thorsteinsson (585744)
Merete Storgaard (3443180)
Terese Katzenstein (3443183)
Steen Ladelund (636968)
Frederikke RĂ¸nsholt (3443195)
Isik Johansen (3443192)
Gitte Pedersen (347570)
Lailoma Hashemi (3443186)
Lars Nielsen (664146)
Lisbeth Nilas (766613)
Niels Obel (135891)
Jesper Bonde (299892)
Anne-Mette Lebech (350465)

November 2016

Comparison of the prevalence of high-risk HPV genotypes in women living with HIV (WLWH) and women fr...

Additional file 1: of HPV-16, HPV-58, and HPV-33 are the most carcinogenic HPV genotypes in Southwestern China and their viral loads are associated with severity of premalignant lesions in the cervix

Wenbo Long (493445)
Zixi Yang (5290553)
Xiabin Li (5290559)
Ming Chen (115604)
Jie Liu (15128)
Yuanxue Zhang (5290550)
Xingwang Sun (5290556)

May 2018

Table S1. Original data of final diagnoses and quantitative PCR identification. (XLS 902 kb

Additional file 1: of Oral-genital human papillomavirus infection in Polish couples: frequent detection of HPV 42

Katarzyna Kiwerska (6310151)
Agata Jozefiak (6310154)
Janina Markowska (6310157)
Witold Kedzia (6310160)
Joanna Jackowska (818180)
Malgorzata Wierzbicka (840183)

February 2019

Table S1. The characteristics of patients and their partners data. The file contains information con...

Additional file 1: Table S1. of Independent prognostic role of human papillomavirus genotype in cervical cancer

Dong Hang (765828)
Meiqun Jia (4070224)
Hongxia Ma (102711)
Jing Zhou (168494)
Xiaoshuang Feng (1430788)
Zhangyan Lyu (4070221)
Jian Yin (64657)
Hong Cui (209000)
Yin Yin (2016565)
Guangfu Jin (102661)
Zhibin Hu (102783)
Hongbing Shen (102791)
Kai Zhang (102844)
Ni Li (304450)
Min Dai (219435)

June 2017

Multiple HPV infections in cervical cancer patients. This table is the supporting information for li...

Additional file 1: of Performance of 6 HCV genotyping 9G test for HCV genotyping in clinical samples

Shrikant Warkad (5506367)
Satish Nimse (5506361)
Keum-Soo Song (5506370)
Wasun Chantratita (721243)
Viroj Pongthanapisith (5506358)
Laxman Nawale (688601)
Taisun Kim (5506364)

July 2018

Table S1. Comparison of 6 HCV Genotyping 9G Test and LiPA 2.0 with the sequencing in 46 discordant s...

Additional file 3: Table S3. of A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16INK4a expression in head and neck squamous cell carcinoma patients

Ryan Chai (3506759)
Yenkai Lim (3506762)
Ian Frazer (3506765)
Yunxia Wan (301085)
Christopher Perry (377554)
Lee Jones (1473259)
Duncan Lambie (3506768)
Chamindie Punyadeera (301091)

March 2016

Summary of results for the detection of HPV-16-specific DNA and RNA in oral rinse of patients with p...

Additional file 2: of Universal human papillomavirus typing by whole genome sequencing following target enrichment: evaluation of assay reproducibility and limit of detection

Tengguo Li (226758)
Elizabeth Unger (4896934)
Mangalathu Rajeevan (4896931)

March 2019

Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...

Additional file 2: Table S2. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Felipe Castro (3540533)
Jill Koshiol (331281)
Wim Quint (106148)
Cosette Wheeler (3540521)
Maura Gillison (362898)
Laurence Vaughan (3540530)
Bernhard Kleter (482404)
Leen-Jan van Doorn (106150)
Anil Chaturvedi (3540524)
Allan Hildesheim (106158)
Mark Schiffman (106112)
Sophia Wang (3489836)
Rosemary Zuna (3540536)
Joan Walker (3540527)
S. Dunn (3540539)
Nicolas Wentzensen (106131)

November 2015

Human papillomavirus (HPV) genotyping reproducibility for 6 formalin-fixed and paraffin embedded (FF...

Additional file 1: Table S1. of Molecular analysis of human Papillomavirus detected among women positive for cervical lesions by visual inspection with acetic acid/Lugolâs iodine (VIA/VILI) in Libreville, Gabon

Pamela Moussavou (3404597)
IsmaĂŤl Koumakpayi (3404618)
Andriniaina Nkili-Meyong (3398633)
Ingrid Labouba (159598)
Ulrich Bisvigou (184038)
Junie Chansi (3404603)
Corinne Engohan-Aloghe (3404609)
Frederic Dissanami (3404615)
Nathalie Ambounda (3404594)
Anne-Sophie Delannoy-Vieillard (3404612)
Laure Diancourt (163898)
Dieudonne Nkoghe (3404600)
Eric Leroy (264004)
Ernest Belembaogo (3404606)
Nicolas Berthet (234813)

September 2016

List of PCR primers sequences used. Table S2. Identified HPV genotypes per samples. (DOCX 287Â kb

Additional file 1: of Comparison of the Roche cobasÂŽ 4800 and Digene Hybrid CaptureÂŽ 2 HPV tests for primary cervical cancer screening in the HPV FOCAL trial

Darrel Cook (2556787)
Wendy Mei (3515411)
Laurie Smith (3515405)
Dirk van Niekerk (31724)
Kathy Ceballos (3515408)
Eduardo Franco (3423452)
Andrew Coldman (3515402)
Gina Ogilvie (365071)
Mel Krajden (480863)

December 2015

Table S1. Baseline Digene HC2/Roche COBAS Results Stratified by LA and Cytology. Table S2. Baseline ...

Additional file 9: Table S8. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Diagnostic performance of HPV vs. HPVÂ + three-gene methylation markers for HSIL cytology. (PDF 152 ...

Additional file 1 of Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples

Catia Sias (6423164)
Leonidas Salichos (224738)
Daniele Lapa (357286)
Franca Nonno (6423167)
Andrea Baiocchini (2575345)
Maria Capobianchi (3409547)
Anna Garbuglia (6423170)

March 2019

Table S1 Study population characteristics of HIV infected patients. (DOCX 14âkb

Additional file 5: Table S4. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Logistic regression analysis of HPV and HPVÂ + three-gene methylation markers for predicting for HSI...

Additional file 7: Table S6. of Molecular Pap smear: HPV genotype and DNA methylation of ADCY8, CDH8, and ZNF582 as an integrated biomarker for high-grade cervical cytology

Jane Shen-Gunther (819926)
Chiou-Miin Wang (5134)
Graham Poage (3454178)
Chun-Lin Lin (3454181)
Luis Perez (468764)
Nancy Banks (3454175)
Tim Huang (249654)

September 2016

Predictive margins for HSIL cytology based on HPV or HPVÂ + three-gene methylation markers. (PDF 196...

Additional file 1: of Low-cost HPV testing and the prevalence of cervical infection in asymptomatic populations in Guatemala

Hong Lou (2477365)
Eduardo Gharzouzi (5225150)
Sarita Guerra (5225129)
Joël Domgue (5225141)
Julie Sawitzke (136636)
Guillermo Villagran (5225159)
Lisa Garland (5225162)
Joseph Boland (451619)
Sarah Wagner (836148)
Héctor Rosas (5225153)
Jami Troxler (5225135)
Heidi McMillen (5225156)
Bailey Kessing (115867)
Enrique Alvirez (5225126)
Miriam Castillo (5225144)
Hesler Morales (5225138)
Victor Argueta (5225168)
Andert Rosingh (5225165)
Femke van Aerde-van Nunen (5225147)
Griselda Lopez (4434367)
Herbert Pinedo (5225132)
Mark Schiffman (106112)
Michael Dean (17049)
Roberto Orozco (5225171)

May 2018

Figure S1. Amplification of HPV positive and negative cell line genomic DNA by Touchdown PCR using B...

Additional file 3: Table S3. of Prevalence and distribution of cervical high-risk human papillomavirus and cytological abnormalities in women living with HIV in Denmark â the SHADE

Kristina Thorsteinsson (585744)
Merete Storgaard (3443180)
Terese Katzenstein (3443183)
Steen Ladelund (636968)
Frederikke RĂ¸nsholt (3443195)
Isik Johansen (3443192)
Gitte Pedersen (347570)
Lailoma Hashemi (3443186)
Lars Nielsen (664146)
Lisbeth Nilas (766613)
Niels Obel (135891)
Jesper Bonde (299892)
Anne-Mette Lebech (350465)

November 2016

Comparison of the prevalence of high-risk HPV genotypes in women living with HIV (WLWH) and women fr...

Additional file 1: of HPV-16, HPV-58, and HPV-33 are the most carcinogenic HPV genotypes in Southwestern China and their viral loads are associated with severity of premalignant lesions in the cervix

Wenbo Long (493445)
Zixi Yang (5290553)
Xiabin Li (5290559)
Ming Chen (115604)
Jie Liu (15128)
Yuanxue Zhang (5290550)
Xingwang Sun (5290556)

May 2018

Table S1. Original data of final diagnoses and quantitative PCR identification. (XLS 902 kb

Additional file 1: of Oral-genital human papillomavirus infection in Polish couples: frequent detection of HPV 42

Katarzyna Kiwerska (6310151)
Agata Jozefiak (6310154)
Janina Markowska (6310157)
Witold Kedzia (6310160)
Joanna Jackowska (818180)
Malgorzata Wierzbicka (840183)

February 2019

Table S1. The characteristics of patients and their partners data. The file contains information con...

Additional file 1: Table S1. of Independent prognostic role of human papillomavirus genotype in cervical cancer

Dong Hang (765828)
Meiqun Jia (4070224)
Hongxia Ma (102711)
Jing Zhou (168494)
Xiaoshuang Feng (1430788)
Zhangyan Lyu (4070221)
Jian Yin (64657)
Hong Cui (209000)
Yin Yin (2016565)
Guangfu Jin (102661)
Zhibin Hu (102783)
Hongbing Shen (102791)
Kai Zhang (102844)
Ni Li (304450)
Min Dai (219435)

June 2017

Multiple HPV infections in cervical cancer patients. This table is the supporting information for li...

Additional file 1: of Performance of 6 HCV genotyping 9G test for HCV genotyping in clinical samples

Shrikant Warkad (5506367)
Satish Nimse (5506361)
Keum-Soo Song (5506370)
Wasun Chantratita (721243)
Viroj Pongthanapisith (5506358)
Laxman Nawale (688601)
Taisun Kim (5506364)

July 2018

Table S1. Comparison of 6 HCV Genotyping 9G Test and LiPA 2.0 with the sequencing in 46 discordant s...

Additional file 3: Table S3. of A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16INK4a expression in head and neck squamous cell carcinoma patients

Ryan Chai (3506759)
Yenkai Lim (3506762)
Ian Frazer (3506765)
Yunxia Wan (301085)
Christopher Perry (377554)
Lee Jones (1473259)
Duncan Lambie (3506768)
Chamindie Punyadeera (301091)

March 2016

Summary of results for the detection of HPV-16-specific DNA and RNA in oral rinse of patients with p...

Additional file 2: of Universal human papillomavirus typing by whole genome sequencing following target enrichment: evaluation of assay reproducibility and limit of detection

Tengguo Li (226758)
Elizabeth Unger (4896934)
Mangalathu Rajeevan (4896931)

March 2019

Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...

Additional file 1: Table S1. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Abstract

Extracted data

Additional file 1: Table S1. of Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods

Abstract

Extracted data

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