List of GLAM2Scan [24] results for scan of the Clostridium difficile R20291 genome for cdPadR1 motif (Fig. 5a) for promoters upstream of genes predicted to be involved in transport/efflux and sporulation. The .xlsx file includes the locus ID for the gene(s) nearest the motif (column A); the gene annotation (column B); the genomic placement (start, column C and end, column D); indication of whether the motif is on the leading (+) or lagging (-) strand (column E); the motif sequence generated by GLAM2Scan (column F); and the score generated by GLAM2Scan that indicates how well the sequence fits the cdPadR1 motif (column G). (XLSX 39 kb
CtrA-binding sites predicted in the fla2 cluster of Rhodobacter sphaeroides using the PWM reported f...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Regions identified in each C. difficile genome by PHAST. Sheet 1. C. difficile strain P29 genome, Sh...
List of GLAM2Scan [24] results for scan of the Clostridium difficile R20291 genome for cdPadR1 motif...
(A) Chromatogram from size exclusion chromatography (SEC) run performed on a Superdex 200 Increase 1...
Statistics of predicted promoters by G4PromFinder, PromPredict, PePPER and bTSSfinder in the whole g...
Coordinates of the validated promoters identified by G4PromFinder in S. coelicolor A3(2). (XLSX 100 ...
Coordinates of the validated promoters identified by G4PromFinder in P. aeruginosa PA14. (XLSX 63 kb
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S2. Inr motif prediction. Pval cutoff 10exp-2; origin = START; only direct strand results are ...
Table S1. Matrices displaying the nucleotide identity (%) of the Tet P regulatory region comprising ...
a show frequencies of tetranucleotide occurrences (in percentages) in terms of “Py,Pu” in H. sapiens...
Figure S2. Nucleotide alignment of the upstream regulatory regions of Tet P in P. sordellii and C. d...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Table S3. DPE motif prediction. Pval cutoff 10exp-2; origin = START; only direct strand results are ...
CtrA-binding sites predicted in the fla2 cluster of Rhodobacter sphaeroides using the PWM reported f...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Regions identified in each C. difficile genome by PHAST. Sheet 1. C. difficile strain P29 genome, Sh...
List of GLAM2Scan [24] results for scan of the Clostridium difficile R20291 genome for cdPadR1 motif...
(A) Chromatogram from size exclusion chromatography (SEC) run performed on a Superdex 200 Increase 1...
Statistics of predicted promoters by G4PromFinder, PromPredict, PePPER and bTSSfinder in the whole g...
Coordinates of the validated promoters identified by G4PromFinder in S. coelicolor A3(2). (XLSX 100 ...
Coordinates of the validated promoters identified by G4PromFinder in P. aeruginosa PA14. (XLSX 63 kb
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S2. Inr motif prediction. Pval cutoff 10exp-2; origin = START; only direct strand results are ...
Table S1. Matrices displaying the nucleotide identity (%) of the Tet P regulatory region comprising ...
a show frequencies of tetranucleotide occurrences (in percentages) in terms of “Py,Pu” in H. sapiens...
Figure S2. Nucleotide alignment of the upstream regulatory regions of Tet P in P. sordellii and C. d...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Table S3. DPE motif prediction. Pval cutoff 10exp-2; origin = START; only direct strand results are ...
CtrA-binding sites predicted in the fla2 cluster of Rhodobacter sphaeroides using the PWM reported f...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Regions identified in each C. difficile genome by PHAST. Sheet 1. C. difficile strain P29 genome, Sh...