List of oligos used for the validation of DE genes and RT qPCR procedure. (DOCX 16 kb
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
De novo genome assembly statistics. File listing different measures used to check the quality of the...
Additional file 2. Overall information about gene expression and VFDB annotation for each locus tag
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Validation of selected differentially expressed (DE) genes. The graphs represent the fold difference...
Expression changes of selected genes and total mRNA transcriptome. (A) The expression of selected ge...
Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...
Table S2. KEGG pathway maps significantly enriched for up-regulated DEGs associated with more than t...
List of specific genes to M. tuberculosis H37Rv after comparing to all surrogate strains. (XLSX 35 k...
Analysis and interpretation of Regions of Difference (RD) analysis in clinically-derived Malawi stra...
Quality screening of sequencing data. This file details the quality control step of the study. (DOCX...
Strains and plasmids used in this study. Table S2. Primers used in this study. Table S3. Primers use...
Table S1. Differential expression of efflux pump genes under RIF, INH, VP+RIF and VP + INH stress in...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Table S6 Three selected KEGG pathway maps enriched for DEGs regulated by induced enhancers. Correspo...
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
De novo genome assembly statistics. File listing different measures used to check the quality of the...
Additional file 2. Overall information about gene expression and VFDB annotation for each locus tag
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Validation of selected differentially expressed (DE) genes. The graphs represent the fold difference...
Expression changes of selected genes and total mRNA transcriptome. (A) The expression of selected ge...
Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...
Table S2. KEGG pathway maps significantly enriched for up-regulated DEGs associated with more than t...
List of specific genes to M. tuberculosis H37Rv after comparing to all surrogate strains. (XLSX 35 k...
Analysis and interpretation of Regions of Difference (RD) analysis in clinically-derived Malawi stra...
Quality screening of sequencing data. This file details the quality control step of the study. (DOCX...
Strains and plasmids used in this study. Table S2. Primers used in this study. Table S3. Primers use...
Table S1. Differential expression of efflux pump genes under RIF, INH, VP+RIF and VP + INH stress in...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Table S6 Three selected KEGG pathway maps enriched for DEGs regulated by induced enhancers. Correspo...
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
De novo genome assembly statistics. File listing different measures used to check the quality of the...
Additional file 2. Overall information about gene expression and VFDB annotation for each locus tag
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