Table S2. KEGG pathway maps significantly enriched for up-regulated DEGs associated with more than two transcribed enhancers. (XLSX 12 kb
Figure S3. Immunofluorescence images showing the positive expression of Mφ lineage markers CD40 in i...
Proline-glutamic acid (PE)- and proline-proline-glutamic acid (PPE)-containing proteins are exclusiv...
Gene expression profile of top induced genes in SSc vs HD monocytes (FDR qâ<â0.25). (DOCX 70Â kb
Table S6 Three selected KEGG pathway maps enriched for DEGs regulated by induced enhancers. Correspo...
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Table S3. Induced enhancers with associated target DEGs up-regulated at 4âh post infection. (XLSX ...
Figure S3. Up-regulated DEGs associated with super enhancers show more infection-specific functions....
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...
Figure S1. Many enhancers respond to M.tb infection with increased eRNA expression. (PDF 80 kb
Venn diagram for the overlap in DEGs and pathways between patient blood and in vitro dendritic and T...
Table S1. Taqman Gene Expression Assays used for qt-PCR. Table of Taqman primer probe sets for assay...
Figure S2. Immunofluorescence images showing the positive expression of Mφ lineage markers CD14 in i...
List of oligos used for the validation of DE genes and RT qPCR procedure. (DOCX 16 kb
Figure S3. Immunofluorescence images showing the positive expression of Mφ lineage markers CD40 in i...
Proline-glutamic acid (PE)- and proline-proline-glutamic acid (PPE)-containing proteins are exclusiv...
Gene expression profile of top induced genes in SSc vs HD monocytes (FDR qâ<â0.25). (DOCX 70Â kb
Table S6 Three selected KEGG pathway maps enriched for DEGs regulated by induced enhancers. Correspo...
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Table S3. Induced enhancers with associated target DEGs up-regulated at 4âh post infection. (XLSX ...
Figure S3. Up-regulated DEGs associated with super enhancers show more infection-specific functions....
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...
Figure S1. Many enhancers respond to M.tb infection with increased eRNA expression. (PDF 80 kb
Venn diagram for the overlap in DEGs and pathways between patient blood and in vitro dendritic and T...
Table S1. Taqman Gene Expression Assays used for qt-PCR. Table of Taqman primer probe sets for assay...
Figure S2. Immunofluorescence images showing the positive expression of Mφ lineage markers CD14 in i...
List of oligos used for the validation of DE genes and RT qPCR procedure. (DOCX 16 kb
Figure S3. Immunofluorescence images showing the positive expression of Mφ lineage markers CD40 in i...
Proline-glutamic acid (PE)- and proline-proline-glutamic acid (PPE)-containing proteins are exclusiv...
Gene expression profile of top induced genes in SSc vs HD monocytes (FDR qâ<â0.25). (DOCX 70Â kb
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