Additional file 3: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Additional file 3: of Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis

Natalia Polouliakh (268165)
Paul Horton (275835)
Kazuhiro Shibanai (5799308)
Kodai Takata (5799311)
Vanessa Ludwig (5799314)
Samik Ghosh (5656999)
Hiroaki Kitano (5834)

September 2018

Figure S3. Visualization of ChiP-seq peaks from ArrayExperss database idenyified in SHOE predictions...

Additional file 4: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

Christian Larney (3518660)
Timothy Bailey (435500)
Peter Koopman (55047)

October 2015

Sequence of the SPCI. The sequence of the SPCI from human and mouse. (TXT 250 bytes

Additional file 5: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Evolutionary changes of gene sets described by the four parameters of conservation explained in the ...

Additional file 1: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

Monomeric SOX10 consensus sequences in the human genome provided as a UCSC Human Genome Browser (hg1...

Additional file 11: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
JosĂŠ RodrĂguez-Molina (3520460)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

SOX10 ChIP-seq peaks in the rat genome using HOMER analysis. The data are provided as a UCSC Rat Gen...

Additional file 12: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

DNase-seq peaks identified in S16 cells that are common to all three experimental replicates. The da...

Additional file 13: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

DNase-seq peaks identified in S16 cells from experimental sample 2 that have an F-Seq score of at le...

Additional file 10: Figure S4. of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
JosĂŠ RodrĂguez-Molina (3520460)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

SOX10 regulates genes that inhibit glial cell differentiation in vivo. Primary Schwann cells were ex...

Additional file 1: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

William Law (493745)
Elizabeth Fogarty (3470564)
Aimée Vester (5162792)
Anthony Antonellis (194161)

May 2018

Figure S1. A computational pipeline to identify putative regulatory SNPs. The human, mouse, and chic...

Additional file 6: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
João Casal Novo Ribeiro (3411863)
Anis Larbi (55705)
João de Magalhães (3411860)

November 2015

Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...

Additional file 6: of Functional characterization of two enhancers located downstream FOXP2

Raúl Torres-Ruiz (5340101)
Antonio Benítez-Burraco (4704076)
Marta Martínez-Lage (6660479)
Sandra Rodríguez-Perales (4858786)
Paloma García-Bellido (6660482)

May 2019

Figure S6. Detailed view of an ENCODE UCSC genome-browser snapshot showing bar graphs with a detaile...

Additional file 10: of GM604 regulates developmental neurogenesis pathways and the expression of genes associated with amyotrophic lateral sclerosis

William Swindell (3555419)
Krzysztof Bojanowski (6036062)
Mark Kindy (636993)
Raymond Chau (6036065)
Dorothy Ko (6036068)

December 2018

DNA binding sites associated with GM6-regulated genes. Genes differentially expressed at each time p...

Additional file 3: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Larbi, Anis
De Magalhães, João Pedro
Monaco, Gianni
Van Dam, Sipko
Casal Novo Ribeiro, João Luis
Cancer Research Center Groningen (CRCG)
University of Basel
University of Liverpool
Universitätsspital Basel

November 2015

Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Funct...

Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC sy...

Additional file 5: of Evolutionary stability of topologically associating domains is associated with conserved gene regulation

Jan Krefting (5612114)
Miguel Andrade-Navarro (3421679)
Jonas Ibn-Salem (3449300)

August 2018

Table S2. Ortholog genes in human and mouse with gene expression correlation across tissues. (TSV 10...

Additional file 3: of Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis

Natalia Polouliakh (268165)
Paul Horton (275835)
Kazuhiro Shibanai (5799308)
Kodai Takata (5799311)
Vanessa Ludwig (5799314)
Samik Ghosh (5656999)
Hiroaki Kitano (5834)

September 2018

Figure S3. Visualization of ChiP-seq peaks from ArrayExperss database idenyified in SHOE predictions...

Additional file 4: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

Christian Larney (3518660)
Timothy Bailey (435500)
Peter Koopman (55047)

October 2015

Sequence of the SPCI. The sequence of the SPCI from human and mouse. (TXT 250 bytes

Additional file 5: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Evolutionary changes of gene sets described by the four parameters of conservation explained in the ...

Additional file 1: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

Monomeric SOX10 consensus sequences in the human genome provided as a UCSC Human Genome Browser (hg1...

Additional file 11: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
JosĂŠ RodrĂguez-Molina (3520460)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

SOX10 ChIP-seq peaks in the rat genome using HOMER analysis. The data are provided as a UCSC Rat Gen...

Additional file 12: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

DNase-seq peaks identified in S16 cells that are common to all three experimental replicates. The da...

Additional file 13: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
José Rodríguez-Molina (3520469)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

DNase-seq peaks identified in S16 cells from experimental sample 2 that have an F-Seq score of at le...

Additional file 10: Figure S4. of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Chetna Gopinath (3520457)
William Law (493745)
JosĂŠ RodrĂguez-Molina (3520460)
Arjun Prasad (3520463)
Lingyun Song (143959)
Gregory Crawford (63273)
James Mullikin (374795)
John Svaren (40481)
Anthony Antonellis (194161)

November 2016

SOX10 regulates genes that inhibit glial cell differentiation in vivo. Primary Schwann cells were ex...

Additional file 1: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

William Law (493745)
Elizabeth Fogarty (3470564)
Aimée Vester (5162792)
Anthony Antonellis (194161)

May 2018

Figure S1. A computational pipeline to identify putative regulatory SNPs. The human, mouse, and chic...

Additional file 6: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
João Casal Novo Ribeiro (3411863)
Anis Larbi (55705)
João de Magalhães (3411860)

November 2015

Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...

Additional file 6: of Functional characterization of two enhancers located downstream FOXP2

Raúl Torres-Ruiz (5340101)
Antonio Benítez-Burraco (4704076)
Marta Martínez-Lage (6660479)
Sandra Rodríguez-Perales (4858786)
Paloma García-Bellido (6660482)

May 2019

Figure S6. Detailed view of an ENCODE UCSC genome-browser snapshot showing bar graphs with a detaile...

Additional file 10: of GM604 regulates developmental neurogenesis pathways and the expression of genes associated with amyotrophic lateral sclerosis

William Swindell (3555419)
Krzysztof Bojanowski (6036062)
Mark Kindy (636993)
Raymond Chau (6036065)
Dorothy Ko (6036068)

December 2018

DNA binding sites associated with GM6-regulated genes. Genes differentially expressed at each time p...

Additional file 3: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Larbi, Anis
De Magalhães, João Pedro
Monaco, Gianni
Van Dam, Sipko
Casal Novo Ribeiro, João Luis
Cancer Research Center Groningen (CRCG)
University of Basel
University of Liverpool
Universitätsspital Basel

November 2015

Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Funct...

Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC sy...

Additional file 5: of Evolutionary stability of topologically associating domains is associated with conserved gene regulation

Jan Krefting (5612114)
Miguel Andrade-Navarro (3421679)
Jonas Ibn-Salem (3449300)

August 2018

Table S2. Ortholog genes in human and mouse with gene expression correlation across tissues. (TSV 10...

Additional file 3: of Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis

Natalia Polouliakh (268165)
Paul Horton (275835)
Kazuhiro Shibanai (5799308)
Kodai Takata (5799311)
Vanessa Ludwig (5799314)
Samik Ghosh (5656999)
Hiroaki Kitano (5834)

September 2018

Figure S3. Visualization of ChiP-seq peaks from ArrayExperss database idenyified in SHOE predictions...

Additional file 4: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

Christian Larney (3518660)
Timothy Bailey (435500)
Peter Koopman (55047)

October 2015

Sequence of the SPCI. The sequence of the SPCI from human and mouse. (TXT 250 bytes

Additional file 5: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Evolutionary changes of gene sets described by the four parameters of conservation explained in the ...

Additional file 3: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Abstract

Extracted data

Additional file 3: of Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

Abstract

Extracted data

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