Additional file 2: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Table_3_Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.XLSX

Andries J. van Tonder (619794)
James E. Bray (619798)
Keith A. Jolley (42429)
Melissa Jansen van Rensburg (6396596)
Sigríður J. Quirk (6396599)
Gunnsteinn Haraldsson (128102)
Martin C. J. Maiden (42431)
Stephen D. Bentley (137281)
Ásgeir Haraldsson (663049)
Helga Erlendsdóttir (3124995)
Karl G. Kristinsson (128114)
Angela B. Brueggemann (489420)

February 2019

Understanding the structure of a bacterial population is essential in order to understand bacterial ...

Additional file 1: of Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Laura Becker (3559670)
Martin Kaase (4876885)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Annicka Reuss (5168066)
Anja von Laer (5168072)
Muna Sin (5168069)
Miriam Korte-Berwanger (5168063)
Sören Gatermann (425252)
Guido Werner (28655)

May 2018

Figure S1. Origin of the 107 German carbapenemase-producing K. pneumoniae isolates. Regions are show...

Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Hassan Jindal (4858885)
Babu Ramanathan (2805598)
Cheng Le (4858882)
Ranganath Gudimella (741797)
Rozaimi Razali (553806)
Rishya Manikam (292939)
Shamala Sekaran (3853327)

February 2018

Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb

Additional file 5: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Recombination events identified in the West African clade (SC2-WA). (a) Maximum likelihood phylogeny...

Additional file 7: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Summary of the genes found in the genetic recombination regions in clade SC1-SA. Genes present in th...

Additional file 10: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Intragenic number of observed and expected numbers of SNPs in the ST217 isolates. All the genes in t...

Additional file 11: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Distribution of genes associated with virulence and colonisation in the ST217 in serotype 1 isolates...

Additional file 2: Figure S2. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

Core genome phylogenetic tree of Case A non-serotypeable isolate and serotype 1 isolates from South ...

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci - Fig 2

Taj Azarian (659326)
Patrick K. Mitchell (6009758)
Maria Georgieva (564535)
Claudette M. Thompson (23230)
Amel Ghouila (573278)
Andrew J. Pollard (44971)
Anne von Gottberg (194681)
Mignon du Plessis (631320)
Martin Antonio (42317)
Brenda A. Kwambana-Adams (6009761)
Stuart C. Clarke (415927)
Dean Everett (355462)
Jennifer Cornick (137262)
Ewa Sadowy (246939)
Waleria Hryniewicz (167713)
Anna Skoczynska (442601)
Jennifer C. Moïsi (775846)
Lesley McGee (425092)
Bernard Beall (36576)
Benjamin J. Metcalf (3962387)
Robert F. Breiman (153635)
PL Ho (6009764)
Raymond Reid (462224)
Katherine L. O’Brien (462225)
Rebecca A. Gladstone (415921)
Stephen D. Bentley (137281)
William P. Hanage (249299)

December 2018

A) Rooted maximum likelihood phylogeny of S. pneumoniae serotype 3 CC180 isolates (n = 301) inferred...

Additional file 12: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Deletion of the immunoglobulin A (iga) protease gene in the ST217 isolates. Genomic comparison of on...

Phylogeny of pneumococcal population structure.

Taj Azarian (659326)
Lindsay R. Grant (462217)
Brian J. Arnold (108902)
Laura L. Hammitt (512148)
Raymond Reid (462224)
Mathuram Santosham (174287)
Robert Weatherholtz (5059640)
Novalene Goklish (3612554)
Claudette M. Thompson (23230)
Stephen D. Bentley (137281)
Katherine L. O’Brien (462225)
William P. Hanage (249299)
Marc Lipsitch (14729)

April 2018

<p>Maximum likelihood phylogeny of 937 pneumococcal carriage isolates inferred from an alignment of ...

Additional file 1: Figure S1. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

BLAST Ring Image of the complete genome sequence of a non-serotypeable and serotype 1 isolate. This ...

Additional file 1: of Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA

Melissa Ward (3547103)
Mariya Goncheva (3547100)
Emily Richardson (3261252)
Paul McAdam (3547106)
Emma Raftis (3547094)
Angela Kearns (225395)
Robert Daum (618022)
Michael David (35198)
Tsai Lauderdale (3547097)
Giles Edwards (519540)
Graeme Nimmo (3547112)
Geoffrey Coombs (196961)
Xander Huijsdens (3547091)
Mark Woolhouse (706888)
J. Fitzgerald (3547109)

July 2016

Supplementary figures and table of isolates. Figure S1. Global distribution of reported ST59 isolate...

Table_1_Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.XLSX

Andries J. van Tonder (619794)
James E. Bray (619798)
Keith A. Jolley (42429)
Melissa Jansen van Rensburg (6396596)
Sigríður J. Quirk (6396599)
Gunnsteinn Haraldsson (128102)
Martin C. J. Maiden (42431)
Stephen D. Bentley (137281)
Ásgeir Haraldsson (663049)
Helga Erlendsdóttir (3124995)
Karl G. Kristinsson (128114)
Angela B. Brueggemann (489420)

February 2019

Understanding the structure of a bacterial population is essential in order to understand bacterial ...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Table_3_Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.XLSX

Andries J. van Tonder (619794)
James E. Bray (619798)
Keith A. Jolley (42429)
Melissa Jansen van Rensburg (6396596)
Sigríður J. Quirk (6396599)
Gunnsteinn Haraldsson (128102)
Martin C. J. Maiden (42431)
Stephen D. Bentley (137281)
Ásgeir Haraldsson (663049)
Helga Erlendsdóttir (3124995)
Karl G. Kristinsson (128114)
Angela B. Brueggemann (489420)

February 2019

Understanding the structure of a bacterial population is essential in order to understand bacterial ...

Additional file 1: of Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Laura Becker (3559670)
Martin Kaase (4876885)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Annicka Reuss (5168066)
Anja von Laer (5168072)
Muna Sin (5168069)
Miriam Korte-Berwanger (5168063)
Sören Gatermann (425252)
Guido Werner (28655)

May 2018

Figure S1. Origin of the 107 German carbapenemase-producing K. pneumoniae isolates. Regions are show...

Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Hassan Jindal (4858885)
Babu Ramanathan (2805598)
Cheng Le (4858882)
Ranganath Gudimella (741797)
Rozaimi Razali (553806)
Rishya Manikam (292939)
Shamala Sekaran (3853327)

February 2018

Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb

Additional file 5: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Recombination events identified in the West African clade (SC2-WA). (a) Maximum likelihood phylogeny...

Additional file 7: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Summary of the genes found in the genetic recombination regions in clade SC1-SA. Genes present in th...

Additional file 10: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Intragenic number of observed and expected numbers of SNPs in the ST217 isolates. All the genes in t...

Additional file 11: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Distribution of genes associated with virulence and colonisation in the ST217 in serotype 1 isolates...

Additional file 2: Figure S2. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

Core genome phylogenetic tree of Case A non-serotypeable isolate and serotype 1 isolates from South ...

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci - Fig 2

Taj Azarian (659326)
Patrick K. Mitchell (6009758)
Maria Georgieva (564535)
Claudette M. Thompson (23230)
Amel Ghouila (573278)
Andrew J. Pollard (44971)
Anne von Gottberg (194681)
Mignon du Plessis (631320)
Martin Antonio (42317)
Brenda A. Kwambana-Adams (6009761)
Stuart C. Clarke (415927)
Dean Everett (355462)
Jennifer Cornick (137262)
Ewa Sadowy (246939)
Waleria Hryniewicz (167713)
Anna Skoczynska (442601)
Jennifer C. Moïsi (775846)
Lesley McGee (425092)
Bernard Beall (36576)
Benjamin J. Metcalf (3962387)
Robert F. Breiman (153635)
PL Ho (6009764)
Raymond Reid (462224)
Katherine L. O’Brien (462225)
Rebecca A. Gladstone (415921)
Stephen D. Bentley (137281)
William P. Hanage (249299)

December 2018

A) Rooted maximum likelihood phylogeny of S. pneumoniae serotype 3 CC180 isolates (n = 301) inferred...

Additional file 12: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Deletion of the immunoglobulin A (iga) protease gene in the ST217 isolates. Genomic comparison of on...

Phylogeny of pneumococcal population structure.

Taj Azarian (659326)
Lindsay R. Grant (462217)
Brian J. Arnold (108902)
Laura L. Hammitt (512148)
Raymond Reid (462224)
Mathuram Santosham (174287)
Robert Weatherholtz (5059640)
Novalene Goklish (3612554)
Claudette M. Thompson (23230)
Stephen D. Bentley (137281)
Katherine L. O’Brien (462225)
William P. Hanage (249299)
Marc Lipsitch (14729)

April 2018

<p>Maximum likelihood phylogeny of 937 pneumococcal carriage isolates inferred from an alignment of ...

Additional file 1: Figure S1. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

BLAST Ring Image of the complete genome sequence of a non-serotypeable and serotype 1 isolate. This ...

Additional file 1: of Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA

Melissa Ward (3547103)
Mariya Goncheva (3547100)
Emily Richardson (3261252)
Paul McAdam (3547106)
Emma Raftis (3547094)
Angela Kearns (225395)
Robert Daum (618022)
Michael David (35198)
Tsai Lauderdale (3547097)
Giles Edwards (519540)
Graeme Nimmo (3547112)
Geoffrey Coombs (196961)
Xander Huijsdens (3547091)
Mark Woolhouse (706888)
J. Fitzgerald (3547109)

July 2016

Supplementary figures and table of isolates. Figure S1. Global distribution of reported ST59 isolate...

Table_1_Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.XLSX

Andries J. van Tonder (619794)
James E. Bray (619798)
Keith A. Jolley (42429)
Melissa Jansen van Rensburg (6396596)
Sigríður J. Quirk (6396599)
Gunnsteinn Haraldsson (128102)
Martin C. J. Maiden (42431)
Stephen D. Bentley (137281)
Ásgeir Haraldsson (663049)
Helga Erlendsdóttir (3124995)
Karl G. Kristinsson (128114)
Angela B. Brueggemann (489420)

February 2019

Understanding the structure of a bacterial population is essential in order to understand bacterial ...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Table_3_Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.XLSX

Andries J. van Tonder (619794)
James E. Bray (619798)
Keith A. Jolley (42429)
Melissa Jansen van Rensburg (6396596)
Sigríður J. Quirk (6396599)
Gunnsteinn Haraldsson (128102)
Martin C. J. Maiden (42431)
Stephen D. Bentley (137281)
Ásgeir Haraldsson (663049)
Helga Erlendsdóttir (3124995)
Karl G. Kristinsson (128114)
Angela B. Brueggemann (489420)

February 2019

Understanding the structure of a bacterial population is essential in order to understand bacterial ...

Additional file 1: of Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Laura Becker (3559670)
Martin Kaase (4876885)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Annicka Reuss (5168066)
Anja von Laer (5168072)
Muna Sin (5168069)
Miriam Korte-Berwanger (5168063)
Sören Gatermann (425252)
Guido Werner (28655)

May 2018

Figure S1. Origin of the 107 German carbapenemase-producing K. pneumoniae isolates. Regions are show...

Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Hassan Jindal (4858885)
Babu Ramanathan (2805598)
Cheng Le (4858882)
Ranganath Gudimella (741797)
Rozaimi Razali (553806)
Rishya Manikam (292939)
Shamala Sekaran (3853327)

February 2018

Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb

Additional file 2: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Abstract

Extracted data

Additional file 2: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Abstract

Extracted data

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