Figure S1. Recombination pattern of the circulant recombinant forms analyzed in this study. Box representing pol (HXB2: 2253â3272) and env (HXB2: 7041â7346) gene fragments used in this study were superimposed on the graphical illustrations of the CRFs09\11\13\45_cpx genomes based on breakpoint data available in Los Alamos HIV database and colored according to the legend at bottom. (TIF 343 kb
Figure S2. Highlight plot of HERV-K HML-2 3p25.3 sequences. The highlight plot displays the differen...
Figure S1. Venn diagram of the differentially expressed genes (DEGs) identified from each individual...
Directed acyclic graph (DAG) presenting possible relationships between Biocentric laboratory (LAB-1/...
Table S4. Best-fit demographic models for HIV-1 CRF11_cpx pol and env datasets. (PDF 64 kb
Figure S4. Geographic distribution of the HIV-1 CRFs09/11/13/45_cpx pol (a) and env (b) gene fragmen...
Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...
Combinatorial strategy to build 8 residual vDNA clones. Each 5′-half clones (i.e., clone 1 and 6 sho...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...
Figure S1. Squished plot of K111 PacBio sequences from patients with CTCL. The squished maps show se...
Expression of Env and CD8-EnvCD 37 and 48 h post-transfection by Flow Cytometry. A. Expression of su...
Figure S2. The estimated pfp (percentage of false prediction) versus the number of identified genes ...
Figure S1. Validation of shRNA system for the study of HIV-1 replication. (A) Western blot detecting...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Intersubtype recombinants classified as circulating recombinant forms (CRFs) or unique recombinant f...
Figure S2. Highlight plot of HERV-K HML-2 3p25.3 sequences. The highlight plot displays the differen...
Figure S1. Venn diagram of the differentially expressed genes (DEGs) identified from each individual...
Directed acyclic graph (DAG) presenting possible relationships between Biocentric laboratory (LAB-1/...
Table S4. Best-fit demographic models for HIV-1 CRF11_cpx pol and env datasets. (PDF 64 kb
Figure S4. Geographic distribution of the HIV-1 CRFs09/11/13/45_cpx pol (a) and env (b) gene fragmen...
Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...
Combinatorial strategy to build 8 residual vDNA clones. Each 5′-half clones (i.e., clone 1 and 6 sho...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...
Figure S1. Squished plot of K111 PacBio sequences from patients with CTCL. The squished maps show se...
Expression of Env and CD8-EnvCD 37 and 48 h post-transfection by Flow Cytometry. A. Expression of su...
Figure S2. The estimated pfp (percentage of false prediction) versus the number of identified genes ...
Figure S1. Validation of shRNA system for the study of HIV-1 replication. (A) Western blot detecting...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Intersubtype recombinants classified as circulating recombinant forms (CRFs) or unique recombinant f...
Figure S2. Highlight plot of HERV-K HML-2 3p25.3 sequences. The highlight plot displays the differen...
Figure S1. Venn diagram of the differentially expressed genes (DEGs) identified from each individual...
Directed acyclic graph (DAG) presenting possible relationships between Biocentric laboratory (LAB-1/...