Additional file 5: Table S3. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Additional file 1: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

March 2019

Table S1. Isolates and genome data. Description of data: List of analysed Campylobacter isolates wit...

Additional file 1: of Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Kaisa Thorell (3411728)
Shaghayegh Hosseini (3411734)
Reyna Palacios GonzĂĄles (3411740)
Chatchai Chaotham (3411719)
David Graham (1625041)
Lawrence Paszat (3411722)
Linda Rabeneck (3411731)
Samuel Lundin (333814)
Intawat Nookaew (163890)
Ăsa SjĂśling (3411743)

February 2016

Supplementary tables. Table S1. Assembly statistics. Table S2. Complete genomes used for compar ativ...

Additional file 1: Table S1. of Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production

Linda van der Graafâvan Bloois (3502463)
Birgitta Duim (103926)
William Miller (11991)
Ken Forbes (3247587)
Jaap Wagenaar (308430)
Aldert Zomer (144349)

September 2016

Table with details of C. fetus SNPs and genes, specific for clades and bovine abortion strains. (XLS...

Additional file 3: Table S2. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Homopolymeric G/C tracts eight nucleotides or longer in selected whole genome-sequenced C. jejuni. (...

Additional file 2: Table S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Selected SNVs detected using NUCmer for comparing all outbreak isolates using 00â2425 as reference...

Additional file 1: Figure S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Dendrogram showing Neighbour-Joining analysis of C. jejuni complete whole genomes. The alignment was...

Additional file 4: of Essential genome of Campylobacter jejuni

Rabindra Mandal (4355449)
Tieshan Jiang (82337)
Young Kwon (2518816)

August 2017

Comparative analysis of the essential genome of C. jejuni with previously identified essential genes...

Additional file 1: of Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut

Fangzhe Ren (5881118)
Xiaofei Li (334285)
Haiyan Tang (3808186)
Qidong Jiang (5881124)
Xi Yun (5881127)
Lin Fang (5898)
Pingyu Huang (5881136)
Yuanyue Tang (5881139)
Qiuchun Li (4864117)
Jinlin Huang (1511983)
Xin-an Jiao (5881142)

October 2018

Figure S1. Identification of the C. jejuni isolate. Table S1. Primers used in this study. Table S2. ...

Additional file 1: Figure S1. of Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni

Abiyad Baig (3565754)
Alan McNally (3115377)
Steven Dunn (3115404)
Konrad Paszkiewicz (131602)
Jukka Corander (105139)
Georgina Manning (362127)

October 2015

Comparison of the cdt operons of C. lari, C. jejuni subsp. Doylei, C. jejuni 81116 and the hyperinva...

Table_1_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.DOCX

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Additional file 5: of Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination

Junhyung Kim (1277919)
Jae-Ho Guk (6092408)
Seung-Hyun Mun (5832059)
Jae-Uk An (4608958)
Hyokeun Song (6641246)
Jinshil Kim (6641249)
Sangryeol Ryu (12777)
Byeonghwa Jeon (29789)
Seongbeom Cho (563776)

April 2019

Figure S3. The correlation between colony forming-units and cycle threshold (Ct) values of C. jejuni...

Table_2_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.DOCX

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Domestication of Campylobacter jejuni NCTC 11168

Ben Pascoe (3139548)
Samuel K. Sheppard (124129)
Lisa K. Williams (6467254)

March 2019

While the model organism allows basic comparison within and between labs, it is important to remembe...

Additional file 3: Figure S2 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

A. Psifidi (3560318)
M. Fife (3560291)
J. Howell (3560294)
O. Matika (3560315)
P. van Diemen (3560309)
R. Kuo (3560297)
J. Smith (6196)
P. Hocking (3560303)
N. Salmon (3560321)
M. Jones (3539771)
D. Hume (3560306)
G. Banos (3560300)
M. Stevens (3560288)
P. Kaiser (3560312)

April 2016

Manhattan plot and Q-Q plot displaying the GWAS results from the AIL experiment (binary (0/1) phenot...

Image_1_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.pdf

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Additional file 1: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

March 2019

Table S1. Isolates and genome data. Description of data: List of analysed Campylobacter isolates wit...

Additional file 1: of Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Kaisa Thorell (3411728)
Shaghayegh Hosseini (3411734)
Reyna Palacios GonzĂĄles (3411740)
Chatchai Chaotham (3411719)
David Graham (1625041)
Lawrence Paszat (3411722)
Linda Rabeneck (3411731)
Samuel Lundin (333814)
Intawat Nookaew (163890)
Ăsa SjĂśling (3411743)

February 2016

Supplementary tables. Table S1. Assembly statistics. Table S2. Complete genomes used for compar ativ...

Additional file 1: Table S1. of Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production

Linda van der Graafâvan Bloois (3502463)
Birgitta Duim (103926)
William Miller (11991)
Ken Forbes (3247587)
Jaap Wagenaar (308430)
Aldert Zomer (144349)

September 2016

Table with details of C. fetus SNPs and genes, specific for clades and bovine abortion strains. (XLS...

Additional file 3: Table S2. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Homopolymeric G/C tracts eight nucleotides or longer in selected whole genome-sequenced C. jejuni. (...

Additional file 2: Table S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Selected SNVs detected using NUCmer for comparing all outbreak isolates using 00â2425 as reference...

Additional file 1: Figure S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Dendrogram showing Neighbour-Joining analysis of C. jejuni complete whole genomes. The alignment was...

Additional file 4: of Essential genome of Campylobacter jejuni

Rabindra Mandal (4355449)
Tieshan Jiang (82337)
Young Kwon (2518816)

August 2017

Comparative analysis of the essential genome of C. jejuni with previously identified essential genes...

Additional file 1: of Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut

Fangzhe Ren (5881118)
Xiaofei Li (334285)
Haiyan Tang (3808186)
Qidong Jiang (5881124)
Xi Yun (5881127)
Lin Fang (5898)
Pingyu Huang (5881136)
Yuanyue Tang (5881139)
Qiuchun Li (4864117)
Jinlin Huang (1511983)
Xin-an Jiao (5881142)

October 2018

Figure S1. Identification of the C. jejuni isolate. Table S1. Primers used in this study. Table S2. ...

Additional file 1: Figure S1. of Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni

Abiyad Baig (3565754)
Alan McNally (3115377)
Steven Dunn (3115404)
Konrad Paszkiewicz (131602)
Jukka Corander (105139)
Georgina Manning (362127)

October 2015

Comparison of the cdt operons of C. lari, C. jejuni subsp. Doylei, C. jejuni 81116 and the hyperinva...

Table_1_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.DOCX

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Additional file 5: of Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination

Junhyung Kim (1277919)
Jae-Ho Guk (6092408)
Seung-Hyun Mun (5832059)
Jae-Uk An (4608958)
Hyokeun Song (6641246)
Jinshil Kim (6641249)
Sangryeol Ryu (12777)
Byeonghwa Jeon (29789)
Seongbeom Cho (563776)

April 2019

Figure S3. The correlation between colony forming-units and cycle threshold (Ct) values of C. jejuni...

Table_2_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.DOCX

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Domestication of Campylobacter jejuni NCTC 11168

Ben Pascoe (3139548)
Samuel K. Sheppard (124129)
Lisa K. Williams (6467254)

March 2019

While the model organism allows basic comparison within and between labs, it is important to remembe...

Additional file 3: Figure S2 of The genomic architecture of resistance to Campylobacter jejuni intestinal colonisation in chickens

A. Psifidi (3560318)
M. Fife (3560291)
J. Howell (3560294)
O. Matika (3560315)
P. van Diemen (3560309)
R. Kuo (3560297)
J. Smith (6196)
P. Hocking (3560303)
N. Salmon (3560321)
M. Jones (3539771)
D. Hume (3560306)
G. Banos (3560300)
M. Stevens (3560288)
P. Kaiser (3560312)

April 2016

Manhattan plot and Q-Q plot displaying the GWAS results from the AIL experiment (binary (0/1) phenot...

Image_1_Genomic Epidemiology of Campylobacter jejuni Transmission in Israel.pdf

Assaf Rokney (25133)
Lea Valinsky (311306)
Jacob Moran-Gilad (5858405)
Katleen Vranckx (3308442)
Vered Agmon (386623)
Miriam Weinberger (5858408)

October 2018

Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a coun...

Additional file 1: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

March 2019

Table S1. Isolates and genome data. Description of data: List of analysed Campylobacter isolates wit...

Additional file 1: of Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Kaisa Thorell (3411728)
Shaghayegh Hosseini (3411734)
Reyna Palacios GonzĂĄles (3411740)
Chatchai Chaotham (3411719)
David Graham (1625041)
Lawrence Paszat (3411722)
Linda Rabeneck (3411731)
Samuel Lundin (333814)
Intawat Nookaew (163890)
Ăsa SjĂśling (3411743)

February 2016

Supplementary tables. Table S1. Assembly statistics. Table S2. Complete genomes used for compar ativ...

Additional file 1: Table S1. of Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production

Linda van der Graafâvan Bloois (3502463)
Birgitta Duim (103926)
William Miller (11991)
Ken Forbes (3247587)
Jaap Wagenaar (308430)
Aldert Zomer (144349)

September 2016

Table with details of C. fetus SNPs and genes, specific for clades and bovine abortion strains. (XLS...

Additional file 5: Table S3. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Abstract

Extracted data

Additional file 5: Table S3. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Abstract

Extracted data

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