Additional file 1: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Additional file 5: Table S5. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

The BLASTX searching results of 4428 BESs with protein databases of S. lycopersicum. (XLS 416 kb

Additional file 12: Figure S2. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

PCR amplification of Xu 781 (I) and Xushu 18 (II) and their 168 F1 individuals with BES_SSR_267. M: ...

Additional file 2: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

Jinwei Wu (3706477)
Hua-Bin Zhao (3706474)
Dan Yu (214174)
Xinwei Xu (3248325)

January 2017

GO (Gene ontology) and COG (Cluster of orthologous groups) annotation for the pooling transcriptome ...

Additional file 5: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Sathish Ponniah (3638047)
Jyothi Thimmapuram (204360)
Ketaki Bhide (3638050)
Venu Kalavacharla (769153)
Muthusamy Manoharan (769156)

January 2017

Orthologous genes identified between I. batatas (Sp1) and I. trifida (Sp2). (XLSX 394 KB

Additional file 6: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Sathish Ponniah (3638047)
Jyothi Thimmapuram (204360)
Ketaki Bhide (3638050)
Venu Kalavacharla (769153)
Muthusamy Manoharan (769156)

January 2017

Primer sequences used for quantitative reverse-transcription PCR (qRT-PCR). (XLSX 12.5 KB

Additional file 2: of The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development

Ming Li (91180)
Songtao Yang (322254)
Wei Xu (28953)
Zhigang Pu (6534404)
Junyan Feng (348531)
Zhangying Wang (6191933)
Cong Zhang (582922)
Meifang Peng (6534407)
Chunguang Du (43588)
Feng Lin (23861)
Changhe Wei (723835)
Shuai Qiao (6534410)
Hongda Zou (3453755)
Lei Zhang (38117)
Yan Li (23143)
Huan Yang (36076)
Anzhong Liao (6534413)
Wei Song (30780)
Zhongren Zhang (6534416)
Ji Li (207201)
Kai Wang (21246)
Yizheng Zhang (723837)
Honghui Lin (188566)
Jinbo Zhang (3599318)
Wenfang Tan (6534419)

April 2019

Table S1. Survey statistic results. Table S2. Sequencing data statistics. Table S3. Statistics of as...

Additional file 1: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Figure S1. The distribution of reads number in different average fragments depth. Figure S2. The dis...

Additional file 8: of Parallel evolution of storage roots in morning glories (Convolvulaceae)

Lauren Eserman (5315306)
Robert Jarret (5315309)
James Leebens-Mack (117283)

May 2018

Table S8. Functional annotation of genes and transcripts in Ipomoea batatas from Trinotate. (XLSX 12...

Additional file 3: of Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida

Zhengmei Yang (6637523)
Jian Sun (27858)
Yao Chen (149006)
Panpan Zhu (714514)
Lei Zhang (38117)
Shaoyuan Wu (129366)
Daifu Ma (4355242)
Qinghe Cao (5926031)
Zongyun Li (4889389)
Tao Xu (3537)

April 2019

Table S3. Accession numbers of bZIP genes in Ipomoea trifida, Arabidopsis thaliana and Solanum lycop...

Additional file 1: of RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)

Tingting Dong (314380)
Mingku Zhu (490114)
Jiawen Yu (6578402)
Rongpeng Han (6578405)
Cheng Tang (439042)
Tao Xu (3537)
Jingran Liu (147313)
Zongyun Li (4889389)

April 2019

Figure S1. The number of genes annotated in seven databases of transcriptome. (PDF 115 kb

Additional file 5: of RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)

Tingting Dong (314380)
Mingku Zhu (490114)
Jiawen Yu (6578402)
Rongpeng Han (6578405)
Cheng Tang (439042)
Tao Xu (3537)
Jingran Liu (147313)
Zongyun Li (4889389)

April 2019

Table S3. The detailed information of unigenes in each GO functional category of transcriptome analy...

Additional file 1: of Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida

Zhengmei Yang (6637523)
Jian Sun (27858)
Yao Chen (149006)
Panpan Zhu (714514)
Lei Zhang (38117)
Shaoyuan Wu (129366)
Daifu Ma (4355242)
Qinghe Cao (5926031)
Zongyun Li (4889389)
Tao Xu (3537)

April 2019

Table S1. Chromosomal locations and segmental duplication of ItfbZIP genes. (EMF 15058 kb

Additional file 9: of Parallel evolution of storage roots in morning glories (Convolvulaceae)

Lauren Eserman (5315306)
Robert Jarret (5315309)
James Leebens-Mack (117283)

May 2018

Table S9. Functional annotation of genes and transcripts in Ipomoea trifida from Trinotate. (XLSX 10...

Additional file 2: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Table S1. The distribution of SSR loci with different SSR unit and different unit number. (DOCX 27 k...

Additional file 1 of Genome-wide identification, characterization, and expression analysis of the sweet potato (Ipomoea batatas [L.] Lam.) ARF, Aux/IAA, GH3, and SAUR gene families

Sarah R. Mathura (17594946)
Fedora Sutton (17334303)
Valerie Bowrin (17334306)

December 2023

Additional file 1: Fig S1. Exon-intron structure of IbAux/IAA genes (figure created on the GSDS serv...

Additional file 5: Table S5. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

The BLASTX searching results of 4428 BESs with protein databases of S. lycopersicum. (XLS 416 kb

Additional file 12: Figure S2. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

PCR amplification of Xu 781 (I) and Xushu 18 (II) and their 168 F1 individuals with BES_SSR_267. M: ...

Additional file 2: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

Jinwei Wu (3706477)
Hua-Bin Zhao (3706474)
Dan Yu (214174)
Xinwei Xu (3248325)

January 2017

GO (Gene ontology) and COG (Cluster of orthologous groups) annotation for the pooling transcriptome ...

Additional file 5: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Sathish Ponniah (3638047)
Jyothi Thimmapuram (204360)
Ketaki Bhide (3638050)
Venu Kalavacharla (769153)
Muthusamy Manoharan (769156)

January 2017

Orthologous genes identified between I. batatas (Sp1) and I. trifida (Sp2). (XLSX 394 KB

Additional file 6: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Sathish Ponniah (3638047)
Jyothi Thimmapuram (204360)
Ketaki Bhide (3638050)
Venu Kalavacharla (769153)
Muthusamy Manoharan (769156)

January 2017

Primer sequences used for quantitative reverse-transcription PCR (qRT-PCR). (XLSX 12.5 KB

Additional file 2: of The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development

Ming Li (91180)
Songtao Yang (322254)
Wei Xu (28953)
Zhigang Pu (6534404)
Junyan Feng (348531)
Zhangying Wang (6191933)
Cong Zhang (582922)
Meifang Peng (6534407)
Chunguang Du (43588)
Feng Lin (23861)
Changhe Wei (723835)
Shuai Qiao (6534410)
Hongda Zou (3453755)
Lei Zhang (38117)
Yan Li (23143)
Huan Yang (36076)
Anzhong Liao (6534413)
Wei Song (30780)
Zhongren Zhang (6534416)
Ji Li (207201)
Kai Wang (21246)
Yizheng Zhang (723837)
Honghui Lin (188566)
Jinbo Zhang (3599318)
Wenfang Tan (6534419)

April 2019

Table S1. Survey statistic results. Table S2. Sequencing data statistics. Table S3. Statistics of as...

Additional file 1: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Figure S1. The distribution of reads number in different average fragments depth. Figure S2. The dis...

Additional file 8: of Parallel evolution of storage roots in morning glories (Convolvulaceae)

Lauren Eserman (5315306)
Robert Jarret (5315309)
James Leebens-Mack (117283)

May 2018

Table S8. Functional annotation of genes and transcripts in Ipomoea batatas from Trinotate. (XLSX 12...

Additional file 3: of Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida

Zhengmei Yang (6637523)
Jian Sun (27858)
Yao Chen (149006)
Panpan Zhu (714514)
Lei Zhang (38117)
Shaoyuan Wu (129366)
Daifu Ma (4355242)
Qinghe Cao (5926031)
Zongyun Li (4889389)
Tao Xu (3537)

April 2019

Table S3. Accession numbers of bZIP genes in Ipomoea trifida, Arabidopsis thaliana and Solanum lycop...

Additional file 1: of RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)

Tingting Dong (314380)
Mingku Zhu (490114)
Jiawen Yu (6578402)
Rongpeng Han (6578405)
Cheng Tang (439042)
Tao Xu (3537)
Jingran Liu (147313)
Zongyun Li (4889389)

April 2019

Figure S1. The number of genes annotated in seven databases of transcriptome. (PDF 115 kb

Additional file 5: of RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)

Tingting Dong (314380)
Mingku Zhu (490114)
Jiawen Yu (6578402)
Rongpeng Han (6578405)
Cheng Tang (439042)
Tao Xu (3537)
Jingran Liu (147313)
Zongyun Li (4889389)

April 2019

Table S3. The detailed information of unigenes in each GO functional category of transcriptome analy...

Additional file 1: of Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida

Zhengmei Yang (6637523)
Jian Sun (27858)
Yao Chen (149006)
Panpan Zhu (714514)
Lei Zhang (38117)
Shaoyuan Wu (129366)
Daifu Ma (4355242)
Qinghe Cao (5926031)
Zongyun Li (4889389)
Tao Xu (3537)

April 2019

Table S1. Chromosomal locations and segmental duplication of ItfbZIP genes. (EMF 15058 kb

Additional file 9: of Parallel evolution of storage roots in morning glories (Convolvulaceae)

Lauren Eserman (5315306)
Robert Jarret (5315309)
James Leebens-Mack (117283)

May 2018

Table S9. Functional annotation of genes and transcripts in Ipomoea trifida from Trinotate. (XLSX 10...

Additional file 2: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Table S1. The distribution of SSR loci with different SSR unit and different unit number. (DOCX 27 k...

Additional file 1 of Genome-wide identification, characterization, and expression analysis of the sweet potato (Ipomoea batatas [L.] Lam.) ARF, Aux/IAA, GH3, and SAUR gene families

Sarah R. Mathura (17594946)
Fedora Sutton (17334303)
Valerie Bowrin (17334306)

December 2023

Additional file 1: Fig S1. Exon-intron structure of IbAux/IAA genes (figure created on the GSDS serv...

Additional file 5: Table S5. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

The BLASTX searching results of 4428 BESs with protein databases of S. lycopersicum. (XLS 416 kb

Additional file 12: Figure S2. of A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

Zengzhi Si (3444098)
Bing Du (308335)
Jinxi Huo (3444101)
Shaozhen He (545933)
Qingchang Liu (545934)
Hong Zhai (524629)

November 2016

PCR amplification of Xu 781 (I) and Xushu 18 (II) and their 168 F1 individuals with BES_SSR_267. M: ...

Additional file 2: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

Jinwei Wu (3706477)
Hua-Bin Zhao (3706474)
Dan Yu (214174)
Xinwei Xu (3248325)

January 2017

GO (Gene ontology) and COG (Cluster of orthologous groups) annotation for the pooling transcriptome ...

Additional file 1: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Abstract

Extracted data

Additional file 1: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

Abstract

Extracted data

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