Additional file 2: of Identification of host cellular proteins that interact with the M protein of a highly pathogenic porcine reproductive and respiratory syndrome virus vaccine strain

Additional file 2: Figure S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Martine Schroyen (3570095)
Christopher Eisley (3570089)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Igseo Choi (3570098)
Graham Plastow (174335)
Leluo Guan (2833298)
Paul Stothard (5814)
Hua Bao (544715)
Arun Kommadath (218634)
James Reecy (3561878)
Joan Lunney (3570092)
Robert Rowland (2223292)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

March 2016

Correlation plots of BE3D cluster 3 log2FC values of transcripts in PHGC3 and PHGC5. PHGC3 was the c...

Additional file 3: of Porcine epidemic diarrhea virus S1 protein is the critical inducer of apoptosis

Yifeng Chen (1412560)
Zhibang Zhang (4239280)
Jie Li (15030)
Yueyi Gao (3842461)
Lei Zhou (19808)
Xinna Ge (573347)
Jun Han (231645)
Xin Guo (123593)
Hanchun Yang (67762)

November 2018

Figure S2. Homology and phylogenetic tree analysis of S proteins utilized in the study. (PPTX 151 kb

Identification of differentially expressed proteins in porcine alveolar macrophages infected with virulent/attenuated strains of porcine reproductive and respiratory syndrome virus.

Yan-Jun Zhou
Jian-Ping Zhu
Tao Zhou
Qun Cheng
Ling-Xue Yu
Ya-Xin Wang
Shen Yang
Yi-Feng Jiang
Wu Tong
Fei Gao
Hai Yu
Guo-Xin Li
Guang-Zhi Tong

The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) is still a seri...

Additional file 1: of Identification of host cellular proteins that interact with the M protein of a highly pathogenic porcine reproductive and respiratory syndrome virus vaccine strain

Qian Wang (32718)
Yanwei Li (167076)
Hong Dong (1480828)
Li Wang (15202)
Jinmei Peng (652391)
Tongqing An (652393)
Xufu Yang (3771469)
Zhijun Tian (652396)
Xuehui Cai (750321)

February 2017

Table S1. The list of the proteins interacting with the PRRSV M protein. (XLS 61Â kb

Additional file 1: Table S1. of Emergence of mosaic recombinant strains potentially associated with vaccine JXA1-R and predominant circulating strains of porcine reproductive and respiratory syndrome virus in different provinces of China

Huajian Zhao (757046)
Qinggong Han (3905074)
Lei Zhang (38117)
Zhiyong Zhang (44058)
Yufeng Wu (567558)
Hong Shen (166278)
Ping Jiang (243020)

April 2017

Primers used in generating overlapping amplicons spanning PRRSV genomes. (DOCX 13 kb

Additional file 2: of Genetic analysis of porcine productive and respiratory syndrome virus between 2013 and 2014 in Southern parts of China: identification of several novel strains with amino acid deletions or insertions in nsp2

Shaofeng Hong (6738080)
Ying Wei (214901)
Siyuan Lin (530022)
Jiabing Huang (4429324)
Wei He (131453)
Jing Yao (169854)
Ying Chen (9697)
Ouyang Kang (6738083)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

May 2019

Table S2. The positions and sizes of aa insertions and deletions in nsp2 of PRRSV strains compared t...

Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Jenelle Dunkelberger (3440393)
Nick SerĂŁo (3552065)
Ziqing Weng (3572444)
Emily Waide (4589698)
Megan Niederwerder (4589704)
Maureen Kerrigan (4589701)
Joan Lunney (3570092)
Raymond Rowland (3587747)
Jack Dekkers (3439892)

November 2017

Number of independent principal components per chromosome required to capture 99.5% of the genetic v...

Additional file 2: Table S2. of First identification of porcine parvovirus 6 in North America by viral metagenomic sequencing of serum from pigs infected with porcine reproductive and respiratory syndrome virus

Erin Schirtzinger (3501818)
Andrew Suddith (3501821)
Benjamin Hause (3501812)
Richard Hesse (3501815)

October 2015

Sequence identifier, State of origin and qPCR Ct for PPV6 and PRRSv infected samples. (DOCX 13 kb

Additional file 1: of Genetic analysis of porcine productive and respiratory syndrome virus between 2013 and 2014 in Southern parts of China: identification of several novel strains with amino acid deletions or insertions in nsp2

Shaofeng Hong (6738080)
Ying Wei (214901)
Siyuan Lin (530022)
Jiabing Huang (4429324)
Wei He (131453)
Jing Yao (169854)
Ying Chen (9697)
Ouyang Kang (6738083)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

May 2019

Table S1. Comparison of the GP5 sequences of the different PRRSV strains examined in this study. (DO...

Additional file 5: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 72 hpv of PRRSV vaccination in pigs compared to control. (XLSX 41 k...

Additional file 4: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 24 hpv of PRRSV vaccination in pigs compared to control. (XLSX 226 ...

MOESM2 of Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Julie Rappe (3580937)
Obdulio García-Nicolás (3580940)
Franziska Flückiger (3580934)
Barbara Thür (3154344)
Martin Hofmann (2818252)
Artur Summerfield (295557)
Nicolas Ruggli (253480)

November 2016

Additional file 2. Comparative reactivity of N from various PRRSV strains with mAb SDOW17 and predic...

Identification of Differentially Expressed Proteins in Porcine Alveolar Macrophages Infected with Virulent/Attenuated Strains of Porcine Reproductive and Respiratory Syndrome Virus

Yan-Jun Zhou (511512)
Jian-Ping Zhu (511513)
Tao Zhou (117050)
Qun Cheng (511514)
Ling-Xue Yu (511515)
Ya-Xin Wang (511516)
Shen Yang (511517)
Yi-Feng Jiang (511518)
Wu Tong (511519)
Fei Gao (29262)
Hai Yu (366836)
Guo-Xin Li (511520)
Guang-Zhi Tong (511521)

January 2014

<div><p>The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) is stil...

MOESM3 of Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Julie Rappe (3580937)
Obdulio García-Nicolás (3580940)
Franziska Flückiger (3580934)
Barbara Thür (3154344)
Martin Hofmann (2818252)
Artur Summerfield (295557)
Nicolas Ruggli (253480)

November 2016

Additional file 3. Selected epitopes of PRRSV N protein recorded in the immune epitope database (IED...

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 2: Figure S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Martine Schroyen (3570095)
Christopher Eisley (3570089)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Igseo Choi (3570098)
Graham Plastow (174335)
Leluo Guan (2833298)
Paul Stothard (5814)
Hua Bao (544715)
Arun Kommadath (218634)
James Reecy (3561878)
Joan Lunney (3570092)
Robert Rowland (2223292)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

March 2016

Correlation plots of BE3D cluster 3 log2FC values of transcripts in PHGC3 and PHGC5. PHGC3 was the c...

Additional file 3: of Porcine epidemic diarrhea virus S1 protein is the critical inducer of apoptosis

Yifeng Chen (1412560)
Zhibang Zhang (4239280)
Jie Li (15030)
Yueyi Gao (3842461)
Lei Zhou (19808)
Xinna Ge (573347)
Jun Han (231645)
Xin Guo (123593)
Hanchun Yang (67762)

November 2018

Figure S2. Homology and phylogenetic tree analysis of S proteins utilized in the study. (PPTX 151 kb

Identification of differentially expressed proteins in porcine alveolar macrophages infected with virulent/attenuated strains of porcine reproductive and respiratory syndrome virus.

Yan-Jun Zhou
Jian-Ping Zhu
Tao Zhou
Qun Cheng
Ling-Xue Yu
Ya-Xin Wang
Shen Yang
Yi-Feng Jiang
Wu Tong
Fei Gao
Hai Yu
Guo-Xin Li
Guang-Zhi Tong

The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) is still a seri...

Additional file 1: of Identification of host cellular proteins that interact with the M protein of a highly pathogenic porcine reproductive and respiratory syndrome virus vaccine strain

Qian Wang (32718)
Yanwei Li (167076)
Hong Dong (1480828)
Li Wang (15202)
Jinmei Peng (652391)
Tongqing An (652393)
Xufu Yang (3771469)
Zhijun Tian (652396)
Xuehui Cai (750321)

February 2017

Table S1. The list of the proteins interacting with the PRRSV M protein. (XLS 61Â kb

Additional file 1: Table S1. of Emergence of mosaic recombinant strains potentially associated with vaccine JXA1-R and predominant circulating strains of porcine reproductive and respiratory syndrome virus in different provinces of China

Huajian Zhao (757046)
Qinggong Han (3905074)
Lei Zhang (38117)
Zhiyong Zhang (44058)
Yufeng Wu (567558)
Hong Shen (166278)
Ping Jiang (243020)

April 2017

Primers used in generating overlapping amplicons spanning PRRSV genomes. (DOCX 13 kb

Additional file 2: of Genetic analysis of porcine productive and respiratory syndrome virus between 2013 and 2014 in Southern parts of China: identification of several novel strains with amino acid deletions or insertions in nsp2

Shaofeng Hong (6738080)
Ying Wei (214901)
Siyuan Lin (530022)
Jiabing Huang (4429324)
Wei He (131453)
Jing Yao (169854)
Ying Chen (9697)
Ouyang Kang (6738083)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

May 2019

Table S2. The positions and sizes of aa insertions and deletions in nsp2 of PRRSV strains compared t...

Additional file 1: Table S1. of Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and co-infection in nursery pigs

Jenelle Dunkelberger (3440393)
Nick SerĂŁo (3552065)
Ziqing Weng (3572444)
Emily Waide (4589698)
Megan Niederwerder (4589704)
Maureen Kerrigan (4589701)
Joan Lunney (3570092)
Raymond Rowland (3587747)
Jack Dekkers (3439892)

November 2017

Number of independent principal components per chromosome required to capture 99.5% of the genetic v...

Additional file 2: Table S2. of First identification of porcine parvovirus 6 in North America by viral metagenomic sequencing of serum from pigs infected with porcine reproductive and respiratory syndrome virus

Erin Schirtzinger (3501818)
Andrew Suddith (3501821)
Benjamin Hause (3501812)
Richard Hesse (3501815)

October 2015

Sequence identifier, State of origin and qPCR Ct for PPV6 and PRRSv infected samples. (DOCX 13 kb

Additional file 1: of Genetic analysis of porcine productive and respiratory syndrome virus between 2013 and 2014 in Southern parts of China: identification of several novel strains with amino acid deletions or insertions in nsp2

Shaofeng Hong (6738080)
Ying Wei (214901)
Siyuan Lin (530022)
Jiabing Huang (4429324)
Wei He (131453)
Jing Yao (169854)
Ying Chen (9697)
Ouyang Kang (6738083)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

May 2019

Table S1. Comparison of the GP5 sequences of the different PRRSV strains examined in this study. (DO...

Additional file 5: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 72 hpv of PRRSV vaccination in pigs compared to control. (XLSX 41 k...

Additional file 4: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Md Islam (257385)
Christine Große-Brinkhaus (412998)
Maren Pröll (707145)
Muhammad Uddin (3439820)
Sharmin Rony (3439817)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Michael Hölker (79376)
Karl Schellander (79383)
Christiane Neuhoff (412997)

August 2016

List of DEGs in PBMCs of pigs at 24 hpv of PRRSV vaccination in pigs compared to control. (XLSX 226 ...

MOESM2 of Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Julie Rappe (3580937)
Obdulio García-Nicolás (3580940)
Franziska Flückiger (3580934)
Barbara Thür (3154344)
Martin Hofmann (2818252)
Artur Summerfield (295557)
Nicolas Ruggli (253480)

November 2016

Additional file 2. Comparative reactivity of N from various PRRSV strains with mAb SDOW17 and predic...

Identification of Differentially Expressed Proteins in Porcine Alveolar Macrophages Infected with Virulent/Attenuated Strains of Porcine Reproductive and Respiratory Syndrome Virus

Yan-Jun Zhou (511512)
Jian-Ping Zhu (511513)
Tao Zhou (117050)
Qun Cheng (511514)
Ling-Xue Yu (511515)
Ya-Xin Wang (511516)
Shen Yang (511517)
Yi-Feng Jiang (511518)
Wu Tong (511519)
Fei Gao (29262)
Hai Yu (366836)
Guo-Xin Li (511520)
Guang-Zhi Tong (511521)

January 2014

<div><p>The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) is stil...

MOESM3 of Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Julie Rappe (3580937)
Obdulio García-Nicolás (3580940)
Franziska Flückiger (3580934)
Barbara Thür (3154344)
Martin Hofmann (2818252)
Artur Summerfield (295557)
Nicolas Ruggli (253480)

November 2016

Additional file 3. Selected epitopes of PRRSV N protein recorded in the immune epitope database (IED...

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 2: Figure S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Martine Schroyen (3570095)
Christopher Eisley (3570089)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Igseo Choi (3570098)
Graham Plastow (174335)
Leluo Guan (2833298)
Paul Stothard (5814)
Hua Bao (544715)
Arun Kommadath (218634)
James Reecy (3561878)
Joan Lunney (3570092)
Robert Rowland (2223292)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

March 2016

Correlation plots of BE3D cluster 3 log2FC values of transcripts in PHGC3 and PHGC5. PHGC3 was the c...

Additional file 3: of Porcine epidemic diarrhea virus S1 protein is the critical inducer of apoptosis

Yifeng Chen (1412560)
Zhibang Zhang (4239280)
Jie Li (15030)
Yueyi Gao (3842461)
Lei Zhou (19808)
Xinna Ge (573347)
Jun Han (231645)
Xin Guo (123593)
Hanchun Yang (67762)

November 2018

Figure S2. Homology and phylogenetic tree analysis of S proteins utilized in the study. (PPTX 151 kb

Identification of differentially expressed proteins in porcine alveolar macrophages infected with virulent/attenuated strains of porcine reproductive and respiratory syndrome virus.

Yan-Jun Zhou
Jian-Ping Zhu
Tao Zhou
Qun Cheng
Ling-Xue Yu
Ya-Xin Wang
Shen Yang
Yi-Feng Jiang
Wu Tong
Fei Gao
Hai Yu
Guo-Xin Li
Guang-Zhi Tong

The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) is still a seri...

Additional file 2: of Identification of host cellular proteins that interact with the M protein of a highly pathogenic porcine reproductive and respiratory syndrome virus vaccine strain

Abstract

Extracted data

Additional file 2: of Identification of host cellular proteins that interact with the M protein of a highly pathogenic porcine reproductive and respiratory syndrome virus vaccine strain

Abstract

Extracted data

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