Additional file 2: Table S1. of Epstein-Barr virus lytic infection promotes activation of Toll-like receptor 8 innate immune response in systemic sclerosis monocytes

Additional file 1: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S1. Many enhancers respond to M.tb infection with increased eRNA expression. (PDF 80 kb

Additional file 4: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...

Additional file 1:Tables S1 and S2. of Sex-specific regulation of chemokine Cxcl5/6 controls neutrophil recruitment and tissue injury in acute inflammatory states

Shimona Madalli (3407489)
Martina Beyrau (3407495)
James Whiteford (3407492)
Johan Duchene (3407486)
Inderpal Singh Nandhra (3407501)
Nimesh Patel (3407483)
Madhur Motwani (531327)
Derek Gilroy (3407504)
Christoph Thiemermann (580414)
Sussan Nourshargh (157725)
Ramona Scotland (3407498)

November 2015

Table S1. Details of antibodies used for flow cytometry. Table S2. Sequence of primers used for real...

Additional file 3: Table S2. of Epstein-Barr virus lytic infection promotes activation of Toll-like receptor 8 innate immune response in systemic sclerosis monocytes

Antonella Farina (3803398)
Giovanna Peruzzi (264239)
Valentina Lacconi (3803395)
Stefania Lenna (282708)
Silvia Quarta (3803407)
Edoardo Rosato (460200)
Anna Vestri (3803401)
Michael York (3803410)
David Dreyfus (3803404)
Alberto Faggioni (299720)
Stefania Morrone (156794)
Maria Trojanowska (481)
G. Farina (3474644)

February 2017

Gene expression profile of top induced genes in SSc vs HD monocytes (FDR qâ<â0.25). (DOCX 70Â kb

Additional file 1: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Table S1. Genes dysregulated due to EBV infection. Table S2. LCLeQTL gene list. Table S3. Replicatio...

Additional file 4: of Transcriptional profile and Epstein-Barr virus infection status of laser-cut immune infiltrates from the brain of patients with progressive multiple sclerosis

Caterina Veroni (753278)
Barbara Serafini (401728)
Barbara Rosicarelli (401731)
Corrado Fagnani (3968225)
Francesca Aloisi (401736)

January 2018

List of Taqman self-designed primers and probes used to study EBV gene expression. The table lists t...

Table1_Increased expression of the TLR7/9 signaling pathways in chronic active EBV infection.xlsx

Luyao Liu (2819149)
Ying Wang (11406)
Wenjie Wang (413433)
Wenjing Ying (550300)
Bijun Sun (8913416)
Xiaochuan Wang (550306)
Jinqiao Sun (550301)

December 2022

We aimed to investigate the immunological mechanisms of the Toll-like receptor (TLR) signaling pathw...

Additional file 2: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...

Additional file 1: of miR-18a reactivates the Epstein-Barr virus through defective DNA damage response and promotes genomic instability in EBV-associated lymphomas

Pengfei Cao (1597378)
Meili Zhang (6164180)
Lujuan Wang (6164183)
Buqing Sai (6164186)
Jiuqi Tang (6164189)
Zhaohui Luo (129694)
Cijun Shuai (129715)
Liyang Zhang (605770)
Zheng Li (26302)
Yanjin Wang (1375503)
Guiyuan Li (129719)
Juanjuan Xiang (129688)

December 2018

Figure S1. Visualization of episomal and integrated EBV DNA by fluorescence in situ hybridization in...

Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Hongyan Sun (327879)
Peng Liu (120506)
Lisa Nolan (3531530)
Susan Lamont (340168)

September 2015

Primers sequence for qPCR validation. Table S2. Quantitative PCR validation. (XLSX 44 kb

Additional file 2: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Figure S1. eQTL data of MS risk variants in whole blood (A) and LCLs (B). Figure S2. Identifying gen...

Additional file 2: Table S2. of Systematic review and meta-analysis of the sero-epidemiological association between Epstein-Barr virus and rheumatoid arthritis

Robert Ball (3561719)
Alison Avenell (82040)
Lorna Aucott (290227)
Peter Hanlon (3498404)
Mark Vickers (259145)

September 2015

Characteristics of 22 included studies. aDemographics of 57 RA patients and 16 other arthritides not...

Additional file 1: of TLR4 modulates inflammatory gene targets in the retina during Bacillus cereus endophthalmitis

Phillip Coburn (5107325)
Frederick Miller (5107322)
Austin LaGrow (5107331)
Salai Parkunan (5107328)
C. Blake Randall (5107313)
Rachel Staats (5107319)
Michelle Callegan (5107316)

April 2018

Table S2. Quantitative PCR primers. Sequences of the primers used for quantitative PCR analysis of m...

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 19: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...

Additional file 1: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S1. Many enhancers respond to M.tb infection with increased eRNA expression. (PDF 80 kb

Additional file 4: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...

Additional file 1:Tables S1 and S2. of Sex-specific regulation of chemokine Cxcl5/6 controls neutrophil recruitment and tissue injury in acute inflammatory states

Shimona Madalli (3407489)
Martina Beyrau (3407495)
James Whiteford (3407492)
Johan Duchene (3407486)
Inderpal Singh Nandhra (3407501)
Nimesh Patel (3407483)
Madhur Motwani (531327)
Derek Gilroy (3407504)
Christoph Thiemermann (580414)
Sussan Nourshargh (157725)
Ramona Scotland (3407498)

November 2015

Table S1. Details of antibodies used for flow cytometry. Table S2. Sequence of primers used for real...

Additional file 3: Table S2. of Epstein-Barr virus lytic infection promotes activation of Toll-like receptor 8 innate immune response in systemic sclerosis monocytes

Antonella Farina (3803398)
Giovanna Peruzzi (264239)
Valentina Lacconi (3803395)
Stefania Lenna (282708)
Silvia Quarta (3803407)
Edoardo Rosato (460200)
Anna Vestri (3803401)
Michael York (3803410)
David Dreyfus (3803404)
Alberto Faggioni (299720)
Stefania Morrone (156794)
Maria Trojanowska (481)
G. Farina (3474644)

February 2017

Gene expression profile of top induced genes in SSc vs HD monocytes (FDR qâ<â0.25). (DOCX 70Â kb

Additional file 1: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Table S1. Genes dysregulated due to EBV infection. Table S2. LCLeQTL gene list. Table S3. Replicatio...

Additional file 4: of Transcriptional profile and Epstein-Barr virus infection status of laser-cut immune infiltrates from the brain of patients with progressive multiple sclerosis

Caterina Veroni (753278)
Barbara Serafini (401728)
Barbara Rosicarelli (401731)
Corrado Fagnani (3968225)
Francesca Aloisi (401736)

January 2018

List of Taqman self-designed primers and probes used to study EBV gene expression. The table lists t...

Table1_Increased expression of the TLR7/9 signaling pathways in chronic active EBV infection.xlsx

Luyao Liu (2819149)
Ying Wang (11406)
Wenjie Wang (413433)
Wenjing Ying (550300)
Bijun Sun (8913416)
Xiaochuan Wang (550306)
Jinqiao Sun (550301)

December 2022

We aimed to investigate the immunological mechanisms of the Toll-like receptor (TLR) signaling pathw...

Additional file 2: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...

Additional file 1: of miR-18a reactivates the Epstein-Barr virus through defective DNA damage response and promotes genomic instability in EBV-associated lymphomas

Pengfei Cao (1597378)
Meili Zhang (6164180)
Lujuan Wang (6164183)
Buqing Sai (6164186)
Jiuqi Tang (6164189)
Zhaohui Luo (129694)
Cijun Shuai (129715)
Liyang Zhang (605770)
Zheng Li (26302)
Yanjin Wang (1375503)
Guiyuan Li (129719)
Juanjuan Xiang (129688)

December 2018

Figure S1. Visualization of episomal and integrated EBV DNA by fluorescence in situ hybridization in...

Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Hongyan Sun (327879)
Peng Liu (120506)
Lisa Nolan (3531530)
Susan Lamont (340168)

September 2015

Primers sequence for qPCR validation. Table S2. Quantitative PCR validation. (XLSX 44 kb

Additional file 2: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Figure S1. eQTL data of MS risk variants in whole blood (A) and LCLs (B). Figure S2. Identifying gen...

Additional file 2: Table S2. of Systematic review and meta-analysis of the sero-epidemiological association between Epstein-Barr virus and rheumatoid arthritis

Robert Ball (3561719)
Alison Avenell (82040)
Lorna Aucott (290227)
Peter Hanlon (3498404)
Mark Vickers (259145)

September 2015

Characteristics of 22 included studies. aDemographics of 57 RA patients and 16 other arthritides not...

Additional file 1: of TLR4 modulates inflammatory gene targets in the retina during Bacillus cereus endophthalmitis

Phillip Coburn (5107325)
Frederick Miller (5107322)
Austin LaGrow (5107331)
Salai Parkunan (5107328)
C. Blake Randall (5107313)
Rachel Staats (5107319)
Michelle Callegan (5107316)

April 2018

Table S2. Quantitative PCR primers. Sequences of the primers used for quantitative PCR analysis of m...

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 19: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...

Additional file 1: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S1. Many enhancers respond to M.tb infection with increased eRNA expression. (PDF 80 kb

Additional file 4: of Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Elena Denisenko (4530682)
Reto Guler (368266)
Musa Mhlanga (4530685)
Harukazu Suzuki (15733)
Frank Brombacher (52142)
Sebastian Schmeier (215058)

January 2019

Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...

Additional file 1:Tables S1 and S2. of Sex-specific regulation of chemokine Cxcl5/6 controls neutrophil recruitment and tissue injury in acute inflammatory states

Shimona Madalli (3407489)
Martina Beyrau (3407495)
James Whiteford (3407492)
Johan Duchene (3407486)
Inderpal Singh Nandhra (3407501)
Nimesh Patel (3407483)
Madhur Motwani (531327)
Derek Gilroy (3407504)
Christoph Thiemermann (580414)
Sussan Nourshargh (157725)
Ramona Scotland (3407498)

November 2015

Table S1. Details of antibodies used for flow cytometry. Table S2. Sequence of primers used for real...

Additional file 2: Table S1. of Epstein-Barr virus lytic infection promotes activation of Toll-like receptor 8 innate immune response in systemic sclerosis monocytes

Abstract

Extracted data

Additional file 2: Table S1. of Epstein-Barr virus lytic infection promotes activation of Toll-like receptor 8 innate immune response in systemic sclerosis monocytes

Abstract

Extracted data

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