Additional file 9: of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

MOESM6 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 6: Table S3. Distribution of the pairs of SNPs in Linkage Disequilibrium between pop...

Table_7_Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds.DOCX

Robert B. Onzima (5625743)
Maulik R. Upadhyay (728774)
Harmen P. Doekes (5625746)
Luiz. F. Brito (5625749)
Mirte Bosse (116283)
Egbert Kanis (5625752)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)

August 2018

Both natural and artificial selection are among the main driving forces shaping genetic variation ac...

Additional file 9: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

Mahdi Mokhber (4906639)
Mohammad Moradi-Shahrbabak (5369738)
Mostafa Sadeghi (497926)
Hossein Moradi-Shahrbabak (5369735)
Alessandra Stella (28791)
Ezequiel Nicolzzi (5369729)
Javad Rahmaninia (5369732)
John Williams (32544)

June 2018

Genome wide distribution of XP-EHH from Azeri and Khuzestani buffalo breed values. (TXT 2963Â kb

Additional file 1: Figure S1. of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Luiz Brito (3664843)
James Kijas (216935)
Ricardo Ventura (3407792)
Mehdi Sargolzaei (551369)
Laercio Porto-Neto (601986)
Angela CĂĄnovas (3834679)
Zeny Feng (3834667)
Mohsen Jafarikia (3688168)
FlĂĄvio Schenkel (3688210)

March 2017

Distribution of hapFLK values; Figure S2. Distribution of hapFLK p-values, and Figure S3. Distributi...

Additional file 2: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

Licia Colli (159403)
Hovirag Lancioni (160231)
Irene Cardinali (2602450)
Anna Olivieri (144908)
Marco Capodiferro (3399029)
Marco Pellecchia (765478)
Marcin Rzepus (3399017)
Wahid Zamani (3399020)
Saeid Naderi (79984)
Francesca Gandini (150515)
Seyed Vahidi (3399032)
Saif Agha (819784)
Ettore Randi (42572)
Vincenza Battaglia (150500)
Maria Sardina (3399023)
Baldassare Portolano (2862608)
Hamid Rezaei (3399026)
Petros Lymberakis (546304)
FrĂŠdĂŠric Boyer (3399038)
Eric Coissac (24933)
FranĂ§ois Pompanon (3399035)
Pierre Taberlet (24932)
Paolo Ajmone Marsan (3297582)
Alessandro Achilli (42157)

December 2015

Table S5. Goat haplogroup frequencies based on modern and ancient control-region mtDNA data from thi...

MOESM3 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 3: Table S1. Environmental variables considered for the landscape genomic analysis. ...

MOESM5 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 5. Genotype distribution of the SNPs detected in the landscape genomics analysis bas...

Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits

Wang, Xiaolong
Liu, Jing
Zhou, Guangxian
Guo, Jiazhong
Yan, Hailong
Niu, Yiyuan
Li, Yan
Yuan, Chao
Geng, Rongqing
Lan, Xianyong
An, Xiaopeng
Tian, Xingui
Zhou, Huangkai
Song, Jiuzhou
Jiang, Yu
Chen, Yulin

December 2016

The goat (Capra hircus) is one of the first farm animals that have undergone domestication and exten...

Additional file 1: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

Licia Colli (159403)
Hovirag Lancioni (160231)
Irene Cardinali (2602450)
Anna Olivieri (144908)
Marco Capodiferro (3399029)
Marco Pellecchia (765478)
Marcin Rzepus (3399017)
Wahid Zamani (3399020)
Saeid Naderi (79984)
Francesca Gandini (150515)
Seyed Vahidi (3399032)
Saif Agha (819784)
Ettore Randi (42572)
Vincenza Battaglia (150500)
Maria Sardina (3399023)
Baldassare Portolano (2862608)
Hamid Rezaei (3399026)
Petros Lymberakis (546304)
Frédéric Boyer (243068)
Eric Coissac (24933)
François Pompanon (24934)
Pierre Taberlet (24932)
Paolo Ajmone Marsan (3297582)
Alessandro Achilli (42157)

December 2015

Table S1. Sources for the 758 goat control-region sequences. Table S2. Control-region haplotypes and...

Additional file 1: of Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

Mahmuda Alam (6468323)
Abdullah Omar (6468326)
Md. Faruque (6468329)
David Notter (6468332)
Kathiravan Periasamy (177856)
Md. Mondal (6468335)
Md. Sarder (6468338)
Md. Shamsuddin (6468341)
Jianhua Cao (473320)
Xiaoyong Du (1865638)
Zhenyang Wu (6468344)
Shuhong Zhao (48168)

March 2019

Table S1. Primer sequences and PCR conditions for genotyping SNP in caprine candidate genes. Table S...

MOESM4 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle PalhiĂ¨re (5986133)
Alessandra CrisĂ (3459263)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
StĂŠphane Joost (5986169)
Paola Crepaldi (517054)

November 2018

Additional file 4. Graphical representation of ROH and iHS results at the breed level of the signals...

MOESM9 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 9: Table S4. Matrix of pairwise Reynolds distances between populations

MOESM11 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 11: Figure S5. MDS plots of Dimensions 1 versus 2 (panel a) and 1 versus 3 (panel b)...

MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat popul...

MOESM3 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 3: Figure S1. Plot of FIS values. Red dots identify populations with statistically s...

MOESM6 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 6: Table S3. Distribution of the pairs of SNPs in Linkage Disequilibrium between pop...

Table_7_Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds.DOCX

Robert B. Onzima (5625743)
Maulik R. Upadhyay (728774)
Harmen P. Doekes (5625746)
Luiz. F. Brito (5625749)
Mirte Bosse (116283)
Egbert Kanis (5625752)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)

August 2018

Both natural and artificial selection are among the main driving forces shaping genetic variation ac...

Additional file 9: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

Mahdi Mokhber (4906639)
Mohammad Moradi-Shahrbabak (5369738)
Mostafa Sadeghi (497926)
Hossein Moradi-Shahrbabak (5369735)
Alessandra Stella (28791)
Ezequiel Nicolzzi (5369729)
Javad Rahmaninia (5369732)
John Williams (32544)

June 2018

Genome wide distribution of XP-EHH from Azeri and Khuzestani buffalo breed values. (TXT 2963Â kb

Additional file 1: Figure S1. of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Luiz Brito (3664843)
James Kijas (216935)
Ricardo Ventura (3407792)
Mehdi Sargolzaei (551369)
Laercio Porto-Neto (601986)
Angela CĂĄnovas (3834679)
Zeny Feng (3834667)
Mohsen Jafarikia (3688168)
FlĂĄvio Schenkel (3688210)

March 2017

Distribution of hapFLK values; Figure S2. Distribution of hapFLK p-values, and Figure S3. Distributi...

Additional file 2: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

Licia Colli (159403)
Hovirag Lancioni (160231)
Irene Cardinali (2602450)
Anna Olivieri (144908)
Marco Capodiferro (3399029)
Marco Pellecchia (765478)
Marcin Rzepus (3399017)
Wahid Zamani (3399020)
Saeid Naderi (79984)
Francesca Gandini (150515)
Seyed Vahidi (3399032)
Saif Agha (819784)
Ettore Randi (42572)
Vincenza Battaglia (150500)
Maria Sardina (3399023)
Baldassare Portolano (2862608)
Hamid Rezaei (3399026)
Petros Lymberakis (546304)
FrĂŠdĂŠric Boyer (3399038)
Eric Coissac (24933)
FranĂ§ois Pompanon (3399035)
Pierre Taberlet (24932)
Paolo Ajmone Marsan (3297582)
Alessandro Achilli (42157)

December 2015

Table S5. Goat haplogroup frequencies based on modern and ancient control-region mtDNA data from thi...

MOESM3 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 3: Table S1. Environmental variables considered for the landscape genomic analysis. ...

MOESM5 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 5. Genotype distribution of the SNPs detected in the landscape genomics analysis bas...

Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits

Wang, Xiaolong
Liu, Jing
Zhou, Guangxian
Guo, Jiazhong
Yan, Hailong
Niu, Yiyuan
Li, Yan
Yuan, Chao
Geng, Rongqing
Lan, Xianyong
An, Xiaopeng
Tian, Xingui
Zhou, Huangkai
Song, Jiuzhou
Jiang, Yu
Chen, Yulin

December 2016

The goat (Capra hircus) is one of the first farm animals that have undergone domestication and exten...

Additional file 1: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

Licia Colli (159403)
Hovirag Lancioni (160231)
Irene Cardinali (2602450)
Anna Olivieri (144908)
Marco Capodiferro (3399029)
Marco Pellecchia (765478)
Marcin Rzepus (3399017)
Wahid Zamani (3399020)
Saeid Naderi (79984)
Francesca Gandini (150515)
Seyed Vahidi (3399032)
Saif Agha (819784)
Ettore Randi (42572)
Vincenza Battaglia (150500)
Maria Sardina (3399023)
Baldassare Portolano (2862608)
Hamid Rezaei (3399026)
Petros Lymberakis (546304)
Frédéric Boyer (243068)
Eric Coissac (24933)
François Pompanon (24934)
Pierre Taberlet (24932)
Paolo Ajmone Marsan (3297582)
Alessandro Achilli (42157)

December 2015

Table S1. Sources for the 758 goat control-region sequences. Table S2. Control-region haplotypes and...

Additional file 1: of Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

Mahmuda Alam (6468323)
Abdullah Omar (6468326)
Md. Faruque (6468329)
David Notter (6468332)
Kathiravan Periasamy (177856)
Md. Mondal (6468335)
Md. Sarder (6468338)
Md. Shamsuddin (6468341)
Jianhua Cao (473320)
Xiaoyong Du (1865638)
Zhenyang Wu (6468344)
Shuhong Zhao (48168)

March 2019

Table S1. Primer sequences and PCR conditions for genotyping SNP in caprine candidate genes. Table S...

MOESM4 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle PalhiĂ¨re (5986133)
Alessandra CrisĂ (3459263)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
StĂŠphane Joost (5986169)
Paola Crepaldi (517054)

November 2018

Additional file 4. Graphical representation of ROH and iHS results at the breed level of the signals...

MOESM9 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 9: Table S4. Matrix of pairwise Reynolds distances between populations

MOESM11 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 11: Figure S5. MDS plots of Dimensions 1 versus 2 (panel a) and 1 versus 3 (panel b)...

MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra Crisà (449807)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
Stéphane Joost (517052)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat popul...

MOESM3 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 3: Figure S1. Plot of FIS values. Red dots identify populations with statistically s...

MOESM6 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli (159403)
Marco Milanesi (3154470)
Andrea Talenti (4171039)
Francesca Bertolini (731812)
Minhui Chen (332801)
Alessandra CrisĂ (3459263)
Kevin Daly (5986172)
Marcello Corvo (5986175)
Bernt Guldbrandtsen (340532)
Johannes Lenstra (3564824)
Benjamin Rosen (791093)
Elia Vajana (3267480)
Gennaro Catillo (3863749)
StĂŠphane Joost (5986169)
Ezequiel Nicolazzi (3504278)
Estelle Rochat (5250493)
Max Rothschild (3569351)
Bertrand Servin (77573)
Tad Sonstegard (392288)
Roberto Steri (3563927)
Curtis Tassell (5986148)
Paolo Ajmone-Marsan (159432)
Paola Crepaldi (517054)
Alessandra Stella (28791)

November 2018

Additional file 6: Table S3. Distribution of the pairs of SNPs in Linkage Disequilibrium between pop...

Table_7_Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds.DOCX

Robert B. Onzima (5625743)
Maulik R. Upadhyay (728774)
Harmen P. Doekes (5625746)
Luiz. F. Brito (5625749)
Mirte Bosse (116283)
Egbert Kanis (5625752)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)

August 2018

Both natural and artificial selection are among the main driving forces shaping genetic variation ac...

Additional file 9: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

Mahdi Mokhber (4906639)
Mohammad Moradi-Shahrbabak (5369738)
Mostafa Sadeghi (497926)
Hossein Moradi-Shahrbabak (5369735)
Alessandra Stella (28791)
Ezequiel Nicolzzi (5369729)
Javad Rahmaninia (5369732)
John Williams (32544)

June 2018

Genome wide distribution of XP-EHH from Azeri and Khuzestani buffalo breed values. (TXT 2963Â kb

Additional file 9: of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Abstract

Extracted data

Additional file 9: of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Abstract

Extracted data

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