Additional file 4: Figure S2. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XL...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Hill rice cultivation in the state of Arunachal Pradesh. a Jhum fields after rice harvesting; b Harv...

Additional file 14: Figure S8. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

Distribution of species records used in suitability model calibrations. (TIF 1695 kb

Additional file 10: Table S4. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

Metrics obtained from genetic diversity studies of O. glumaepatula in Latin America. (DOCX 12 kb

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 11: Figure S7. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina Villafañe (3933272)
José Bocanegra (3933269)
Rodrigo Moreno (2938173)

April 2017

Details of panicles (top), ligules and auricles (bottom) of (A) Oryza latifolia with flower size sma...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 1: Figure S1. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Optimum K value of 4 groups established for Panel A (511 cultivars). Results obtained from STRUCTURE...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 6: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Determination of the best K value(s) based on mean LnP(D) over five runs for each K value, and rate ...

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 6: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ Fig 4. (NEXML 453Â ...

Additional file 7: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ Fig 5. (NEXML 400Â ...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XL...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Hill rice cultivation in the state of Arunachal Pradesh. a Jhum fields after rice harvesting; b Harv...

Additional file 14: Figure S8. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

Distribution of species records used in suitability model calibrations. (TIF 1695 kb

Additional file 10: Table S4. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

Metrics obtained from genetic diversity studies of O. glumaepatula in Latin America. (DOCX 12 kb

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 11: Figure S7. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina Villafañe (3933272)
José Bocanegra (3933269)
Rodrigo Moreno (2938173)

April 2017

Details of panicles (top), ligules and auricles (bottom) of (A) Oryza latifolia with flower size sma...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 1: Figure S1. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Optimum K value of 4 groups established for Panel A (511 cultivars). Results obtained from STRUCTURE...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 6: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Determination of the best K value(s) based on mean LnP(D) over five runs for each K value, and rate ...

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 6: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ Fig 4. (NEXML 453Â ...

Additional file 7: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ Fig 5. (NEXML 400Â ...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XL...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Hill rice cultivation in the state of Arunachal Pradesh. a Jhum fields after rice harvesting; b Harv...

Additional file 4: Figure S2. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Abstract

Extracted data

Additional file 4: Figure S2. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Abstract

Extracted data

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