Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 3: of Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)

B. Swamy (3473741)
Noraziyah Shamsudin (4035344)
Site Rahman (4035347)
Ramil Mauleon (276292)
Wickneswari Ratnam (3933176)
Ma. Sta. Cruz (4035341)
Arvind Kumar (227201)

May 2017

Table S1. Various population parameters measured in the germplasm. Table S2. Subpopulation-specific ...

Additional file 3: Table S2. of Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance

Mayuri Munasinghe (729901)
Adam Price (729908)

May 2016

Genotype of 326 SNPs for 135 Sri Lankan landraces plus 18 OryzaSNP accessions (the last 18 entries)....

Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Pericarp and hull color of 157 ORSC accessions grouped by subpopulation (at Kâ=â6). Number of OR...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 2 Table S3. of Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

Weihua Qiao (119099)
Lan Qi (3566423)
Zhijun Cheng (381109)
Long Su (3566417)
Jing Li (10611)
Yan Sun (22436)
Junfang Ren (3566420)
Xiaoming Zheng (1265265)
Qingwen Yang (119119)

August 2016

QTLs for ten agronomic traits detected in 198 CSSLs at Nanjing and Sanya sites. Table S1: Sequence i...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 9: Table S8. of Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

Matthew Shenton (3556076)
Chie Iwamoto (3556073)
Nori Kurata (233527)
Kazuho Ikeo (2984)

August 2016

Differential representation (over or underrepresentation) in rhizosphere of early-diverged Oryza spe...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Tabl...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 3: of Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)

B. Swamy (3473741)
Noraziyah Shamsudin (4035344)
Site Rahman (4035347)
Ramil Mauleon (276292)
Wickneswari Ratnam (3933176)
Ma. Sta. Cruz (4035341)
Arvind Kumar (227201)

May 2017

Table S1. Various population parameters measured in the germplasm. Table S2. Subpopulation-specific ...

Additional file 3: Table S2. of Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance

Mayuri Munasinghe (729901)
Adam Price (729908)

May 2016

Genotype of 326 SNPs for 135 Sri Lankan landraces plus 18 OryzaSNP accessions (the last 18 entries)....

Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Pericarp and hull color of 157 ORSC accessions grouped by subpopulation (at Kâ=â6). Number of OR...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 2 Table S3. of Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

Weihua Qiao (119099)
Lan Qi (3566423)
Zhijun Cheng (381109)
Long Su (3566417)
Jing Li (10611)
Yan Sun (22436)
Junfang Ren (3566420)
Xiaoming Zheng (1265265)
Qingwen Yang (119119)

August 2016

QTLs for ten agronomic traits detected in 198 CSSLs at Nanjing and Sanya sites. Table S1: Sequence i...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 9: Table S8. of Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

Matthew Shenton (3556076)
Chie Iwamoto (3556073)
Nori Kurata (233527)
Kazuho Ikeo (2984)

August 2016

Differential representation (over or underrepresentation) in rhizosphere of early-diverged Oryza spe...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Tabl...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 3: of Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)

B. Swamy (3473741)
Noraziyah Shamsudin (4035344)
Site Rahman (4035347)
Ramil Mauleon (276292)
Wickneswari Ratnam (3933176)
Ma. Sta. Cruz (4035341)
Arvind Kumar (227201)

May 2017

Table S1. Various population parameters measured in the germplasm. Table S2. Subpopulation-specific ...

Additional file 3: Table S2. of Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance

Mayuri Munasinghe (729901)
Adam Price (729908)

May 2016

Genotype of 326 SNPs for 135 Sri Lankan landraces plus 18 OryzaSNP accessions (the last 18 entries)....

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Abstract

Extracted data

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Abstract

Extracted data

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