Additional file 6: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Additional file 6: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 9: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

A) List of 219 Genes Encoding Proteins Differentially Expressed (DE) in Milk Exosomes and Predicted ...

Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 1: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...

Additional file 2: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 4: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...

Additional file 10: Table S1. of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Gene clusters differing in expression between the CoPS-1/2 (coagulase-positive Staphyloccoci in 1st ...

Additional file 14: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Data normalization and selection of differently expressed genes (DEGs) (DOCX 15Â kb

Additional file 12: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Pooling, labeling, and hybridization of RNA sample schemes used in microarray analysis. (DOCX 680Â k...

Additional file 13: Table S5. of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

The primer sequences, amplicon length, melting temperature and no. of GenBank access of housekeeping...

Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa M Kosciuczuk
Paweł Lisowski
Justyna Jarczak
Alicja Majewska
Magdalena Rzewuska
Lech Zwierzchowski
Emilia Bagnicka

June 2017

Abstract Background Genome-wide gene expression profiling allows for identification of genes involve...

Additional file 6: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

Animal Infection and Milk Exosome Data from Staph infected quarters. Control exosomes came from same...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 2: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...

Additional file 6: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 9: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

A) List of 219 Genes Encoding Proteins Differentially Expressed (DE) in Milk Exosomes and Predicted ...

Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 1: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...

Additional file 2: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 4: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...

Additional file 10: Table S1. of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Gene clusters differing in expression between the CoPS-1/2 (coagulase-positive Staphyloccoci in 1st ...

Additional file 14: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Data normalization and selection of differently expressed genes (DEGs) (DOCX 15Â kb

Additional file 12: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Pooling, labeling, and hybridization of RNA sample schemes used in microarray analysis. (DOCX 680Â k...

Additional file 13: Table S5. of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

The primer sequences, amplicon length, melting temperature and no. of GenBank access of housekeeping...

Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa M Kosciuczuk
Paweł Lisowski
Justyna Jarczak
Alicja Majewska
Magdalena Rzewuska
Lech Zwierzchowski
Emilia Bagnicka

June 2017

Abstract Background Genome-wide gene expression profiling allows for identification of genes involve...

Additional file 6: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

Animal Infection and Milk Exosome Data from Staph infected quarters. Control exosomes came from same...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 2: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...

Additional file 6: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 9: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

A) List of 219 Genes Encoding Proteins Differentially Expressed (DE) in Milk Exosomes and Predicted ...

Additional file 6: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Abstract

Extracted data

Additional file 6: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Abstract

Extracted data

Related items

Related items