Additional file 22: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Additional file 4: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Table S3. Number of species, ranged by phyla, along the digestive tract identified by culturomics, m...

Additional file 6: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Figure S3. Number of identified species by culturomics (a), with aerointolerant (b) and aerotolerant...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 20: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

S. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 115Â kb

Additional file 1: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Oral-saliva. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CS...

Additional file 15: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

N. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb

Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb

Additional file 4: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

C. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 5: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

D. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 127Â kb

Additional file 7: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

F. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 3: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

B. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 98Â kb

Additional file 8: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

G. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 133Â kb

Additional file 10: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

I. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 113Â kb

Additional file 23: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Corrections required for identifications by Illumina MiSeq Reporter v2.5 software package. This is a...

The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof H. Sundin
Antonio Mendoza-Ladd
Mingtao Zeng
Diana Diaz-Arévalo
Elisa Morales
B. Matthew Fagan
Javier Ordoñez
Philip Velez
Nishaal Antony
Richard W. McCallum

July 2017

Abstract Background The upper half of the human small intestine, known as the jejunum, is the primar...

Additional file 4: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Table S3. Number of species, ranged by phyla, along the digestive tract identified by culturomics, m...

Additional file 6: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Figure S3. Number of identified species by culturomics (a), with aerointolerant (b) and aerotolerant...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 20: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

S. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 115Â kb

Additional file 1: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Oral-saliva. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CS...

Additional file 15: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

N. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb

Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb

Additional file 4: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

C. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 5: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

D. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 127Â kb

Additional file 7: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

F. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 3: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

B. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 98Â kb

Additional file 8: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

G. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 133Â kb

Additional file 10: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

I. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 113Â kb

Additional file 23: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Corrections required for identifications by Illumina MiSeq Reporter v2.5 software package. This is a...

The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof H. Sundin
Antonio Mendoza-Ladd
Mingtao Zeng
Diana Diaz-Arévalo
Elisa Morales
B. Matthew Fagan
Javier Ordoñez
Philip Velez
Nishaal Antony
Richard W. McCallum

July 2017

Abstract Background The upper half of the human small intestine, known as the jejunum, is the primar...

Additional file 4: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Table S3. Number of species, ranged by phyla, along the digestive tract identified by culturomics, m...

Additional file 6: of Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Morgane Mailhe (5894600)
Davide Ricaboni (2697394)
Véronique Vitton (5894603)
Jean-Michel Gonzalez (5894606)
Dipankar Bachar (160850)
Grégory Dubourg (557924)
Frédéric Cadoret (5894609)
Catherine Robert (13458)
Jérémy Delerce (5894612)
Anthony Levasseur (45449)
Pierre-Edouard Fournier (13453)
Emmanouil Angelakis (330226)
Jean-Christophe Lagier (363683)
Didier Raoult (3833)

October 2018

Figure S3. Number of identified species by culturomics (a), with aerointolerant (b) and aerotolerant...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 22: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Abstract

Extracted data

Additional file 22: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Abstract

Extracted data

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