Additional file 8: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof H. Sundin
Antonio Mendoza-Ladd
Mingtao Zeng
Diana Diaz-Arévalo
Elisa Morales
B. Matthew Fagan
Javier Ordoñez
Philip Velez
Nishaal Antony
Richard W. McCallum

July 2017

Abstract Background The upper half of the human small intestine, known as the jejunum, is the primar...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 2: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Frédéric Raymond (51256)
Maurice Boissinot (59036)
Amin Ouameur (6561317)
Maxime Déraspe (3480068)
Pier-Luc Plante (604214)
Sewagnouin Kpanou (6561320)
Ève Bérubé (6561323)
Ann Huletsky (2418028)
Paul Roy (6561326)
Marc Ouellette (51263)
Michel Bergeron (6561329)
Jacques Corbeil (51262)

April 2019

Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...

Additional file 3: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

B. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 98Â kb

Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb

Additional file 5: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

D. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 127Â kb

Additional file 7: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

F. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 4: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

C. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 1: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Oral-saliva. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CS...

Additional file 20: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

S. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 115Â kb

Additional file 15: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

N. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb

Additional file 10: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

I. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 113Â kb

Additional file 22: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Relative Abundance of 26 Major Genera in the Jejunum of Individual Subjects by 16S Metagenomic Analy...

Additional file 23: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Corrections required for identifications by Illumina MiSeq Reporter v2.5 software package. This is a...

Additional file 1: of Intestinal microbial communities associated with acute enteric infections and disease recovery

Pallavi Singh (416686)
Tracy Teal (2792575)
Terence Marsh (2480470)
James Tiedje (228498)
Rebekah Mosci (3436736)
Katherine Jernigan (3436745)
Angela Zell (3436748)
Duane Newton (3436733)
Hossein Salimnia (3436739)
Paul Lephart (37479)
Daniel Sundin (3436751)
Walid Khalife (3436754)
Robert Britton (218572)
James Rudrik (3436742)
Shannon Manning (3436730)

September 2015

The richness and diversity estimates for intestinal communities from otherwise healthy individuals w...

The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof H. Sundin
Antonio Mendoza-Ladd
Mingtao Zeng
Diana Diaz-Arévalo
Elisa Morales
B. Matthew Fagan
Javier Ordoñez
Philip Velez
Nishaal Antony
Richard W. McCallum

July 2017

Abstract Background The upper half of the human small intestine, known as the jejunum, is the primar...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 2: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Frédéric Raymond (51256)
Maurice Boissinot (59036)
Amin Ouameur (6561317)
Maxime Déraspe (3480068)
Pier-Luc Plante (604214)
Sewagnouin Kpanou (6561320)
Ève Bérubé (6561323)
Ann Huletsky (2418028)
Paul Roy (6561326)
Marc Ouellette (51263)
Michel Bergeron (6561329)
Jacques Corbeil (51262)

April 2019

Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...

Additional file 3: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

B. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 98Â kb

Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb

Additional file 5: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

D. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 127Â kb

Additional file 7: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

F. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 4: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

C. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 101Â kb

Additional file 1: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Oral-saliva. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CS...

Additional file 20: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

S. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 115Â kb

Additional file 15: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

N. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb

Additional file 10: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

I. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 113Â kb

Additional file 22: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Relative Abundance of 26 Major Genera in the Jejunum of Individual Subjects by 16S Metagenomic Analy...

Additional file 23: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof Sundin (3145059)
Antonio Mendoza-Ladd (4254088)
Mingtao Zeng (4254085)
Diana Diaz-ArĂŠvalo (4254133)
Elisa Morales (4254091)
B. Fagan (4254094)
Javier OrdoĂąez (4254130)
Philip Velez (4254073)
Nishaal Antony (4254076)
Richard McCallum (4254079)

July 2017

Corrections required for identifications by Illumina MiSeq Reporter v2.5 software package. This is a...

Additional file 1: of Intestinal microbial communities associated with acute enteric infections and disease recovery

Pallavi Singh (416686)
Tracy Teal (2792575)
Terence Marsh (2480470)
James Tiedje (228498)
Rebekah Mosci (3436736)
Katherine Jernigan (3436745)
Angela Zell (3436748)
Duane Newton (3436733)
Hossein Salimnia (3436739)
Paul Lephart (37479)
Daniel Sundin (3436751)
Walid Khalife (3436754)
Robert Britton (218572)
James Rudrik (3436742)
Shannon Manning (3436730)

September 2015

The richness and diversity estimates for intestinal communities from otherwise healthy individuals w...

The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Olof H. Sundin
Antonio Mendoza-Ladd
Mingtao Zeng
Diana Diaz-Arévalo
Elisa Morales
B. Matthew Fagan
Javier Ordoñez
Philip Velez
Nishaal Antony
Richard W. McCallum

July 2017

Abstract Background The upper half of the human small intestine, known as the jejunum, is the primar...

Additional file 3: Table S2. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

Wing Chung (3521765)
Alan Walker (3508322)
Petra Louis (526555)
Julian Parkhill (30393)
Joan Vermeiren (3521771)
Douwina Bosscher (3521768)
Sylvia Duncan (3521762)
Harry Flint (3521759)

January 2016

Metastats analysis of the top 38 most abundant operational taxonomic unit (OTUs; those accounting fo...

Additional file 2: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Frédéric Raymond (51256)
Maurice Boissinot (59036)
Amin Ouameur (6561317)
Maxime Déraspe (3480068)
Pier-Luc Plante (604214)
Sewagnouin Kpanou (6561320)
Ève Bérubé (6561323)
Ann Huletsky (2418028)
Paul Roy (6561326)
Marc Ouellette (51263)
Michel Bergeron (6561329)
Jacques Corbeil (51262)

April 2019

Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...

Additional file 8: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Abstract

Extracted data

Additional file 8: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

Abstract

Extracted data

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