Additional file 1 of A two-step framework for inferring direct protein-protein interaction network from AP-MS data

Supplementary Tables. This file provides the supplementary tables (Tables S1–S24) that illustrate why significant improvements are observed when some scoring methods are used in the first phase. We present the top-10 ranked PPIs detected from three data sets after the refinement procedure. Meanwhile, we also record the initial ranks of these top-10 ranked PPIs in these tables. Note that we list more than 10 PPIs in some tables such as Table S3 and Table S5 because there are top-k ranked PPIs (k >10) that have the same ranking score. (PDF 67 kb