Proportion of non-PCR amplified reads within the Resistome-UMI dataset as a function of (a) capture efficiency and (b) proportion of DNA library pooled for sequencing. Each dot is a sequencing library (n = 16); blue = beef, orange = poultry, red = swine, gray = WWTP. Logarithmic trend lines with 95% confidence intervals depicted in dashed lines (R 2 = 0.93 and 0.98, respectively). (EPS 180 kb
Figure S2. Each species identified by centrifuge showing total bases over number of reads as proport...
Contains two tables: the first table displays the effect on the coverage of the pathogenic genome of...
Figure S1. Schematic diagram of the chemical enrichment process of AP-sites using an aldehyde reacti...
Proportion of non-amplified PCR reads within each gene (y-axes) as a function of gene rank abundance...
Number of aligned reads to each gene group identified only in enriched samples, by resistance class ...
Abstract Background Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ec...
Distribution of read abundance. Figure shows the histograms of read abundance per each gene. Each fr...
Figure S1. Additional analyses of DNA sequencing data. (A) Plot showing the global read coverage of ...
Gain function plot for each sample. Representation of the gain in reads per kilobase per million rea...
Microbial diversity in the 4 microbiome projects. Representation of microbial diversity using, (a) g...
Gene abundance comparison of metal resistance between swine and human samples. Gene abundance was ex...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
Figure S1. Bases classified total or target over centrifuge score. Each sample has two lines of the ...
Histogram of gene coverage distribution by hybridizing probes. Two metrics were provided by NimbleGe...
Systematic approach to study exome capture variability in exome-sequencing (A) Three-generation pedi...
Figure S2. Each species identified by centrifuge showing total bases over number of reads as proport...
Contains two tables: the first table displays the effect on the coverage of the pathogenic genome of...
Figure S1. Schematic diagram of the chemical enrichment process of AP-sites using an aldehyde reacti...
Proportion of non-amplified PCR reads within each gene (y-axes) as a function of gene rank abundance...
Number of aligned reads to each gene group identified only in enriched samples, by resistance class ...
Abstract Background Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ec...
Distribution of read abundance. Figure shows the histograms of read abundance per each gene. Each fr...
Figure S1. Additional analyses of DNA sequencing data. (A) Plot showing the global read coverage of ...
Gain function plot for each sample. Representation of the gain in reads per kilobase per million rea...
Microbial diversity in the 4 microbiome projects. Representation of microbial diversity using, (a) g...
Gene abundance comparison of metal resistance between swine and human samples. Gene abundance was ex...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
Figure S1. Bases classified total or target over centrifuge score. Each sample has two lines of the ...
Histogram of gene coverage distribution by hybridizing probes. Two metrics were provided by NimbleGe...
Systematic approach to study exome capture variability in exome-sequencing (A) Three-generation pedi...
Figure S2. Each species identified by centrifuge showing total bases over number of reads as proport...
Contains two tables: the first table displays the effect on the coverage of the pathogenic genome of...
Figure S1. Schematic diagram of the chemical enrichment process of AP-sites using an aldehyde reacti...