Histogram of gene coverage distribution by hybridizing probes. Two metrics were provided by NimbleGene: direct coverage (red bars) and adjacent coverage (cyan bars). Ninety percent of the genes are covered by at least 96.9% of direct coverage, and 90% of the genes are covered by 100% of adjacent coverage. (PDF 173 kb
Proportion of non-amplified PCR reads within each gene (y-axes) as a function of gene rank abundance...
Distribution of genetic heritability estimates for gene expression levels of A) all probes (n = 18,1...
Figure S4. Overlap between top ranking genes from TCGA and external data. Top panels show the overla...
Distribution of read abundance. Figure shows the histograms of read abundance per each gene. Each fr...
Gain function plot for each sample. Representation of the gain in reads per kilobase per million rea...
Gene abundance comparison of metal resistance between swine and human samples. Gene abundance was ex...
Blast annotations summary. Summary of the classification steps of assembled genes. The sequential an...
Figure S1. MammaSeq⢠gene coverage. The percentage of protein coding bases pairs in each gene that...
Figure S3. Tetranucleotide frequency plots of SAG BS0038H10 in BACL1. Nucleotide composition PCAs (a...
Figure S1. Predictive ranking power of randomly selected subsets of resistance genes on the full dat...
Table S7. Mean coverage achieved by Agilent SureSelect and Roche NimbleGen libraries within 90 PCR-c...
Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...
Example of MLMM R package plot outputs for analysis of the MFA.Dim.1 variable. (A): Bonferroni corre...
Ranking performance at increasing effect size for the main methods. The effect size (fold change) in...
Heat map showing the most abundant antibiotic resistance genes across environments. Figure S2. Relat...
Proportion of non-amplified PCR reads within each gene (y-axes) as a function of gene rank abundance...
Distribution of genetic heritability estimates for gene expression levels of A) all probes (n = 18,1...
Figure S4. Overlap between top ranking genes from TCGA and external data. Top panels show the overla...
Distribution of read abundance. Figure shows the histograms of read abundance per each gene. Each fr...
Gain function plot for each sample. Representation of the gain in reads per kilobase per million rea...
Gene abundance comparison of metal resistance between swine and human samples. Gene abundance was ex...
Blast annotations summary. Summary of the classification steps of assembled genes. The sequential an...
Figure S1. MammaSeq⢠gene coverage. The percentage of protein coding bases pairs in each gene that...
Figure S3. Tetranucleotide frequency plots of SAG BS0038H10 in BACL1. Nucleotide composition PCAs (a...
Figure S1. Predictive ranking power of randomly selected subsets of resistance genes on the full dat...
Table S7. Mean coverage achieved by Agilent SureSelect and Roche NimbleGen libraries within 90 PCR-c...
Figure S2. Correlation of mutual information scores across platforms. Top and bottom panels show the...
Example of MLMM R package plot outputs for analysis of the MFA.Dim.1 variable. (A): Bonferroni corre...
Ranking performance at increasing effect size for the main methods. The effect size (fold change) in...
Heat map showing the most abundant antibiotic resistance genes across environments. Figure S2. Relat...
Proportion of non-amplified PCR reads within each gene (y-axes) as a function of gene rank abundance...
Distribution of genetic heritability estimates for gene expression levels of A) all probes (n = 18,1...
Figure S4. Overlap between top ranking genes from TCGA and external data. Top panels show the overla...