Additional file 1: Figure S1. of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Additional file 1: of Overexpression of the Tibetan Plateau annual wild barley (Hordeum spontaneum) HsCIPKs enhances rice tolerance to heavy metal toxicities and other abiotic stresses

Weihuai Pan (5743934)
Jinqiu Shen (5743937)
Zhongzhong Zheng (5743940)
Xu Yan (110026)
Jianxin Shou (5743943)
Wenxiang Wang (2260624)
Lixi Jiang (845188)
Jianwei Pan (84155)

September 2018

Figure S1. Effects of abiotic stresses on root elongation in rice. Figure S2. Alignment analysis of ...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 3: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

ANOVA results for the measured traits under zinc toxicity for 211 indica accessions. (DOCX 26Â kb

Additional file 4: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

Correlations between all measured traits under control (upper triangular) and stress (lower triangul...

Data_Sheet_1_Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.).zip

Cattarin Theerawitaya (4961338)
Samart Wanchana (2837645)
Vinitchan Ruanjaichon (12478623)
Rujira Tisaram (13915203)
Thapanee Samphumphuang (4961335)
Thanyaporn Sotesaritkul (13915206)
Suriyan Cha-um (4961332)
Theerayut Toojinda (4018604)

October 2022

Rice is the staple food for more than half of the world’s population. Iron toxicity limits rice prod...

QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang
Kai Chen
Yunlong Pang
Shahzad Amir Naveed
Xiuqin Zhao
Xiaoqian Wang
Yun Wang
Michael Dingkuhn
Julie Pasuquin
Zhikang Li
Jianlong Xu

October 2017

Abstract Background Ferrous iron (Fe) and zinc (Zn) at high concentration in the soil cause heavy me...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file 1: of Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection

Junliang Zhao (4470565)
Wu Yang (414613)
Shaohong Zhang (474694)
Tifeng Yang (4470550)
Qin Liu (59805)
Jingfang Dong (4470556)
Hua Fu (178428)
Xingxue Mao (4470544)
Bin Liu (5899)

November 2018

Figure S1. Phylogenetic tree of the 312 rice accessions based on their genotypes determined by 700â...

Additional file 1: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S1. Comparison of eight traits between PYZX, P02428 and RILs in four environments in this stud...

Additional file 1: Table S1. of Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome

Haruhiko Inoue (4321282)
Mitsuru Nakamura (2349163)
Tatsumi Mizubayashi (4321291)
Akira Takahashi (571709)
Shoji Sugano (4321285)
Shuuichi Fukuoka (4321294)
Nagao Hayashi (4321288)

August 2017

The primers (OsWRKY45, NH1, PR1a, Pb1 and Rubq1) were used for quantitative RT-PCR analysis. The oth...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Construction of an integrated map through comparative studies allows the identification of candidate regions for resistance to ferrous iron toxicity in rice

Dufey, Inès
Mathieu, Anne-Sophie
Draye, Xavier
Lutts, Stanley
Bertin, Pierre

January 2015

Breeding for resistance to Fe toxicity in rice remains challenging because of the complex nature of ...

Table_1_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.csv

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Genome Wide Association Study for Iron and Zinc in rice (CRP-Biofortification)

January 2016

The dataset consists of genotyping data of 192 rice accessions including landraces, basmati varietie...

Additional file 1: of Overexpression of the Tibetan Plateau annual wild barley (Hordeum spontaneum) HsCIPKs enhances rice tolerance to heavy metal toxicities and other abiotic stresses

Weihuai Pan (5743934)
Jinqiu Shen (5743937)
Zhongzhong Zheng (5743940)
Xu Yan (110026)
Jianxin Shou (5743943)
Wenxiang Wang (2260624)
Lixi Jiang (845188)
Jianwei Pan (84155)

September 2018

Figure S1. Effects of abiotic stresses on root elongation in rice. Figure S2. Alignment analysis of ...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 3: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

ANOVA results for the measured traits under zinc toxicity for 211 indica accessions. (DOCX 26Â kb

Additional file 4: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

Correlations between all measured traits under control (upper triangular) and stress (lower triangul...

Data_Sheet_1_Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.).zip

Cattarin Theerawitaya (4961338)
Samart Wanchana (2837645)
Vinitchan Ruanjaichon (12478623)
Rujira Tisaram (13915203)
Thapanee Samphumphuang (4961335)
Thanyaporn Sotesaritkul (13915206)
Suriyan Cha-um (4961332)
Theerayut Toojinda (4018604)

October 2022

Rice is the staple food for more than half of the world’s population. Iron toxicity limits rice prod...

QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang
Kai Chen
Yunlong Pang
Shahzad Amir Naveed
Xiuqin Zhao
Xiaoqian Wang
Yun Wang
Michael Dingkuhn
Julie Pasuquin
Zhikang Li
Jianlong Xu

October 2017

Abstract Background Ferrous iron (Fe) and zinc (Zn) at high concentration in the soil cause heavy me...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file 1: of Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection

Junliang Zhao (4470565)
Wu Yang (414613)
Shaohong Zhang (474694)
Tifeng Yang (4470550)
Qin Liu (59805)
Jingfang Dong (4470556)
Hua Fu (178428)
Xingxue Mao (4470544)
Bin Liu (5899)

November 2018

Figure S1. Phylogenetic tree of the 312 rice accessions based on their genotypes determined by 700â...

Additional file 1: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S1. Comparison of eight traits between PYZX, P02428 and RILs in four environments in this stud...

Additional file 1: Table S1. of Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome

Haruhiko Inoue (4321282)
Mitsuru Nakamura (2349163)
Tatsumi Mizubayashi (4321291)
Akira Takahashi (571709)
Shoji Sugano (4321285)
Shuuichi Fukuoka (4321294)
Nagao Hayashi (4321288)

August 2017

The primers (OsWRKY45, NH1, PR1a, Pb1 and Rubq1) were used for quantitative RT-PCR analysis. The oth...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Construction of an integrated map through comparative studies allows the identification of candidate regions for resistance to ferrous iron toxicity in rice

Dufey, Inès
Mathieu, Anne-Sophie
Draye, Xavier
Lutts, Stanley
Bertin, Pierre

January 2015

Breeding for resistance to Fe toxicity in rice remains challenging because of the complex nature of ...

Table_1_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.csv

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Genome Wide Association Study for Iron and Zinc in rice (CRP-Biofortification)

January 2016

The dataset consists of genotyping data of 192 rice accessions including landraces, basmati varietie...

Additional file 1: of Overexpression of the Tibetan Plateau annual wild barley (Hordeum spontaneum) HsCIPKs enhances rice tolerance to heavy metal toxicities and other abiotic stresses

Weihuai Pan (5743934)
Jinqiu Shen (5743937)
Zhongzhong Zheng (5743940)
Xu Yan (110026)
Jianxin Shou (5743943)
Wenxiang Wang (2260624)
Lixi Jiang (845188)
Jianwei Pan (84155)

September 2018

Figure S1. Effects of abiotic stresses on root elongation in rice. Figure S2. Alignment analysis of ...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 1: Figure S1. of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Abstract

Extracted data

Additional file 1: Figure S1. of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Abstract

Extracted data

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