Additional file 3: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 3 of Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage

Ning Li (45258)
Hongliang Zheng (222648)
Jingnan Cui (1964074)
Jingguo Wang (564601)
Hualong Liu (5118581)
Jian Sun (27858)
Tongtong Liu (2553457)
Hongwei Zhao (62620)
Yongcai Lai (685061)
Detang Zou (5118578)

April 2019

: Figure S1. LD decay analysis of the whole genome in 295 japonica rice varieties. (TIFF 534 kb

Table3.doc

Guo-Min Zhang (5091614)
Tian-Qing Zheng (232608)
Zhuo Chen (135585)
Yong-Li Wang (849940)
Ying Wang (11406)
Yu-Min Shi (767916)
Chun-Chao Wang (4517803)
Li-Yan Zhang (5091608)
Jun-Tao Ma (5091605)
Ling-Wei Deng (5091611)
Wan Li (156663)
Tian-Tian Xu (4277338)
Cheng-Zhi Liang (5091617)
Jian-Long Xu (232605)
Zhi-Kang Li (232619)

April 2018

Grain minerals in rice, especially those in milled grains, are important sources of micro-nutriti...

Additional file 4: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

Correlations between all measured traits under control (upper triangular) and stress (lower triangul...

Additional file 1: Figure S1. of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

PCA 3D plot of the first three principal components (PC) in 222 accessions (a) and 211 accessions (b...

QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang
Kai Chen
Yunlong Pang
Shahzad Amir Naveed
Xiuqin Zhao
Xiaoqian Wang
Yun Wang
Michael Dingkuhn
Julie Pasuquin
Zhikang Li
Jianlong Xu

October 2017

Abstract Background Ferrous iron (Fe) and zinc (Zn) at high concentration in the soil cause heavy me...

Data_Sheet_1_Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.).zip

Cattarin Theerawitaya (4961338)
Samart Wanchana (2837645)
Vinitchan Ruanjaichon (12478623)
Rujira Tisaram (13915203)
Thapanee Samphumphuang (4961335)
Thanyaporn Sotesaritkul (13915206)
Suriyan Cha-um (4961332)
Theerayut Toojinda (4018604)

October 2022

Rice is the staple food for more than half of the world’s population. Iron toxicity limits rice prod...

Short commu Molecular mapping of quantitati tolerance in rice seedlin

Tsugufumi Ogawa A
Dongzhi Lin A
Hee-jong Koh C

November 2014

Excess zinc harms the growth of rice plants and zinc toxicity can easily occur in acid soils. The ai...

QTL Analysis for Grain Iron and Zinc Concentrations in Two O. nivara Derived Backcross Populations

B.P.M. Swamy
K. Kaladhar
K. Anuradha
Anil K. Batchu
T. Longvah
N. Sarla

July 2018

Identification of quantitative trait loci (QTLs) for grain mineral elements can assist in faster and...

Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.)

Theerawitaya, Cattarin
Wanchana, Samart
Ruanjaichon, Vinitchan
Tisaram, Rujira
Samphumphuang, Thapanee
Sotesaritkul, Thanyaporn
Cha-um, Suriyan
Toojinda, Theerayut

September 2022

This vcf file constitute underlying raw data material for the manuscript "Determination of traits re...

Population genetic structure and association mapping for iron toxicity tolerance in rice.

S Pawar
E Pandit
I C Mohanty
D Saha
S K Pradhan

January 2021

Iron (Fe) toxicity is a major abiotic stress which severely reduces rice yield in many countries of ...

Genome Wide Association Study for Iron and Zinc in rice (CRP-Biofortification)

January 2016

The dataset consists of genotyping data of 192 rice accessions including landraces, basmati varietie...

Construction of an integrated map through comparative studies allows the identification of candidate regions for resistance to ferrous iron toxicity in rice

Dufey, Inès
Mathieu, Anne-Sophie
Draye, Xavier
Lutts, Stanley
Bertin, Pierre

January 2015

Breeding for resistance to Fe toxicity in rice remains challenging because of the complex nature of ...

QTL underlying iron and zinc toxicity tolerances at seedling stage revealed by two sets of reciprocal introgression populations of rice (Oryza sativa L.)

Liu, Huan
Soomro, Aijaz
Zhu, Yajun
Qiu, Xianjin
Chen, Kai
Zheng, Tianqing
Yang, Longwei
Xing, Danying
Xu, Jianlong

August 2016

AbstractIron and zinc are two trace elements that are essential for rice. But they are toxic at high...

Linkage mapping for grain iron and zinc content in F2 population derived from the cross between PAU201 and Palman 579 in rice (Oryza sativa L.)

Kumar, J.
Jain, S.
Jain, R.K.

September 2034

Molecular markers provide novel tools for linkage mapping of QTLs of target traits and can greatly e...

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 3 of Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage

Ning Li (45258)
Hongliang Zheng (222648)
Jingnan Cui (1964074)
Jingguo Wang (564601)
Hualong Liu (5118581)
Jian Sun (27858)
Tongtong Liu (2553457)
Hongwei Zhao (62620)
Yongcai Lai (685061)
Detang Zou (5118578)

April 2019

: Figure S1. LD decay analysis of the whole genome in 295 japonica rice varieties. (TIFF 534 kb

Table3.doc

Guo-Min Zhang (5091614)
Tian-Qing Zheng (232608)
Zhuo Chen (135585)
Yong-Li Wang (849940)
Ying Wang (11406)
Yu-Min Shi (767916)
Chun-Chao Wang (4517803)
Li-Yan Zhang (5091608)
Jun-Tao Ma (5091605)
Ling-Wei Deng (5091611)
Wan Li (156663)
Tian-Tian Xu (4277338)
Cheng-Zhi Liang (5091617)
Jian-Long Xu (232605)
Zhi-Kang Li (232619)

April 2018

Grain minerals in rice, especially those in milled grains, are important sources of micro-nutriti...

Additional file 4: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

Correlations between all measured traits under control (upper triangular) and stress (lower triangul...

Additional file 1: Figure S1. of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang (1682)
Kai Chen (129938)
Yunlong Pang (841406)
Shahzad Naveed (4541503)
Xiuqin Zhao (142512)
Xiaoqian Wang (460263)
Yun Wang (32846)
Michael Dingkuhn (480014)
Julie Pasuquin (4541500)
Zhikang Li (416310)
Jianlong Xu (841260)

October 2017

PCA 3D plot of the first three principal components (PC) in 222 accessions (a) and 211 accessions (b...

QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Jian Zhang
Kai Chen
Yunlong Pang
Shahzad Amir Naveed
Xiuqin Zhao
Xiaoqian Wang
Yun Wang
Michael Dingkuhn
Julie Pasuquin
Zhikang Li
Jianlong Xu

October 2017

Abstract Background Ferrous iron (Fe) and zinc (Zn) at high concentration in the soil cause heavy me...

Data_Sheet_1_Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.).zip

Cattarin Theerawitaya (4961338)
Samart Wanchana (2837645)
Vinitchan Ruanjaichon (12478623)
Rujira Tisaram (13915203)
Thapanee Samphumphuang (4961335)
Thanyaporn Sotesaritkul (13915206)
Suriyan Cha-um (4961332)
Theerayut Toojinda (4018604)

October 2022

Rice is the staple food for more than half of the world’s population. Iron toxicity limits rice prod...

Short commu Molecular mapping of quantitati tolerance in rice seedlin

Tsugufumi Ogawa A
Dongzhi Lin A
Hee-jong Koh C

November 2014

Excess zinc harms the growth of rice plants and zinc toxicity can easily occur in acid soils. The ai...

QTL Analysis for Grain Iron and Zinc Concentrations in Two O. nivara Derived Backcross Populations

B.P.M. Swamy
K. Kaladhar
K. Anuradha
Anil K. Batchu
T. Longvah
N. Sarla

July 2018

Identification of quantitative trait loci (QTLs) for grain mineral elements can assist in faster and...

Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.)

Theerawitaya, Cattarin
Wanchana, Samart
Ruanjaichon, Vinitchan
Tisaram, Rujira
Samphumphuang, Thapanee
Sotesaritkul, Thanyaporn
Cha-um, Suriyan
Toojinda, Theerayut

September 2022

This vcf file constitute underlying raw data material for the manuscript "Determination of traits re...

Population genetic structure and association mapping for iron toxicity tolerance in rice.

S Pawar
E Pandit
I C Mohanty
D Saha
S K Pradhan

January 2021

Iron (Fe) toxicity is a major abiotic stress which severely reduces rice yield in many countries of ...

Genome Wide Association Study for Iron and Zinc in rice (CRP-Biofortification)

January 2016

The dataset consists of genotyping data of 192 rice accessions including landraces, basmati varietie...

Construction of an integrated map through comparative studies allows the identification of candidate regions for resistance to ferrous iron toxicity in rice

Dufey, Inès
Mathieu, Anne-Sophie
Draye, Xavier
Lutts, Stanley
Bertin, Pierre

January 2015

Breeding for resistance to Fe toxicity in rice remains challenging because of the complex nature of ...

QTL underlying iron and zinc toxicity tolerances at seedling stage revealed by two sets of reciprocal introgression populations of rice (Oryza sativa L.)

Liu, Huan
Soomro, Aijaz
Zhu, Yajun
Qiu, Xianjin
Chen, Kai
Zheng, Tianqing
Yang, Longwei
Xing, Danying
Xu, Jianlong

August 2016

AbstractIron and zinc are two trace elements that are essential for rice. But they are toxic at high...

Linkage mapping for grain iron and zinc content in F2 population derived from the cross between PAU201 and Palman 579 in rice (Oryza sativa L.)

Kumar, J.
Jain, S.
Jain, R.K.

September 2034

Molecular markers provide novel tools for linkage mapping of QTLs of target traits and can greatly e...

Table_3_Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.XLSX

Gwen Iris L. Descalsota (5620820)
B. P. Mallikarjuna Swamy (2577031)
Hein Zaw (5772269)
Mary Ann Inabangan-Asilo (5620826)
Amery Amparado (3473750)
Ramil Mauleon (276292)
Prabhjit Chadha-Mohanty (3473747)
Emily C. Arocena (5772272)
Chitra Raghavan (4570453)
Hei Leung (93614)
Jose E. Hernandez (5438843)
Antonio B. Lalusin (5772275)
Merlyn S. Mendioro (5772278)
Ma. Genaleen Q. Diaz (5772281)
Russell Reinke (509040)

September 2018

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of t...

Additional file 3 of Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage

Ning Li (45258)
Hongliang Zheng (222648)
Jingnan Cui (1964074)
Jingguo Wang (564601)
Hualong Liu (5118581)
Jian Sun (27858)
Tongtong Liu (2553457)
Hongwei Zhao (62620)
Yongcai Lai (685061)
Detang Zou (5118578)

April 2019

: Figure S1. LD decay analysis of the whole genome in 295 japonica rice varieties. (TIFF 534 kb

Table3.doc

Guo-Min Zhang (5091614)
Tian-Qing Zheng (232608)
Zhuo Chen (135585)
Yong-Li Wang (849940)
Ying Wang (11406)
Yu-Min Shi (767916)
Chun-Chao Wang (4517803)
Li-Yan Zhang (5091608)
Jun-Tao Ma (5091605)
Ling-Wei Deng (5091611)
Wan Li (156663)
Tian-Tian Xu (4277338)
Cheng-Zhi Liang (5091617)
Jian-Long Xu (232605)
Zhi-Kang Li (232619)

April 2018

Grain minerals in rice, especially those in milled grains, are important sources of micro-nutriti...

Additional file 3: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Abstract

Extracted data

Additional file 3: of QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Abstract

Extracted data

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