Additional file 1: Table S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Additional file 1: of Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Wenqing Li (1421971)
Yanlei Liu (1430260)
Yong Yang (63842)
Xiaoman Xie (4070350)
Yizeng Lu (4109974)
Zhirong Yang (348765)
Xiaobai Jin (5795192)
Wenpan Dong (171490)
Zhili Suo (5795201)

September 2018

Figure S1. NJ trees of Diospyros taxa based on each of the ten chloroplast barcodes, showing the res...

Additional file 13 of Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)

Tong-Jian Liu (14176529)
Shu-Yan Zhang (16424495)
Lei Wei (18880)
Wei Lin (6475)
Hai-Fei Yan (11947395)
Gang Hao (134522)
Xue-Jun Ge (8949380)

July 2023

Additional file 13: Table S1. Samples, vouchers, and GenBank accessions used in this study. Table S2...

Additional file 1: of Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses

Sui Wang (6109667)
Chuanping Yang (413436)
Xiyang Zhao (721003)
Su Chen (663531)
Guan-Zheng Qu (413430)

December 2018

Table S1. Taxa and ID of the selected species. Table S2. The related information of primers. Table S...

Additional file 8: Figure S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The mapping depth and coverage of three Primulina chloroplast genomes shown in Integrative Genomics ...

Additional file 16: Figure S2. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The PIC values of eight newly developed chloroplast markers calculated by bioinformatic analysis and...

The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng
Meizhen Xu
Chen Feng
Eric J. B. von Wettberg
Ming Kang

November 2017

Abstract Background Primulina Hance is an emerging model for studying evolutionary divergence, adapt...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Additional file 6: of Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau

Guangpeng Ren (200995)
Elena Conti (628642)
Nicolas Salamin (2923683)

August 2015

GenBank accession numbers for DNA sequence data of the 13 taxa in the family Primulaceae chloroplast...

Additional file 1: of Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

Dyfed Lloyd Evans (2862584)
Shailesh Joshi (1391158)
Jianping Wang (215292)

January 2019

List of Tripidium chloroplast amplification primers. List of the 13 primers used in amplifying the c...

Additional file 1: of Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers

Eugeniya Bondar (6296057)
Yuliya Putintseva (4724973)
Nataliya Oreshkova (6296060)
Konstantin Krutovsky (4724994)

February 2019

Table S1. Genetic variants identified in the Siberian larch chloroplast genome. (XLSX 24 kb

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Figure S1. The distribution and presence of simple sequence repeats (SSRs) in the cp genome of Oresi...

Additional file 4: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S2. Primer pairs designed for each detected polymorphic gSSRs within Oresitrophe and between O...

Additional file 3: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S1. The detail information of polymorphic gSSRs identified within Oresitrophe and between Ores...

Additional file 6: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S4. cpSSRs identified from comparative analysis of chloroplast genome for Oresitrophe and Mukd...

Additional file 1: of Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring

Sheng Zhu (5314430)
Meng Xu (62933)
Haoran Wang (272166)
Huixin Pan (5314427)
Guangping Wang (528995)
Minren Huang (346708)

May 2018

Table S1. The ratio of split-reads mapped to each cpDNA of six Populus species using Bowtie and BWA....

Additional file 1: of Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Wenqing Li (1421971)
Yanlei Liu (1430260)
Yong Yang (63842)
Xiaoman Xie (4070350)
Yizeng Lu (4109974)
Zhirong Yang (348765)
Xiaobai Jin (5795192)
Wenpan Dong (171490)
Zhili Suo (5795201)

September 2018

Figure S1. NJ trees of Diospyros taxa based on each of the ten chloroplast barcodes, showing the res...

Additional file 13 of Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)

Tong-Jian Liu (14176529)
Shu-Yan Zhang (16424495)
Lei Wei (18880)
Wei Lin (6475)
Hai-Fei Yan (11947395)
Gang Hao (134522)
Xue-Jun Ge (8949380)

July 2023

Additional file 13: Table S1. Samples, vouchers, and GenBank accessions used in this study. Table S2...

Additional file 1: of Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses

Sui Wang (6109667)
Chuanping Yang (413436)
Xiyang Zhao (721003)
Su Chen (663531)
Guan-Zheng Qu (413430)

December 2018

Table S1. Taxa and ID of the selected species. Table S2. The related information of primers. Table S...

Additional file 8: Figure S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The mapping depth and coverage of three Primulina chloroplast genomes shown in Integrative Genomics ...

Additional file 16: Figure S2. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The PIC values of eight newly developed chloroplast markers calculated by bioinformatic analysis and...

The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng
Meizhen Xu
Chen Feng
Eric J. B. von Wettberg
Ming Kang

November 2017

Abstract Background Primulina Hance is an emerging model for studying evolutionary divergence, adapt...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Additional file 6: of Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau

Guangpeng Ren (200995)
Elena Conti (628642)
Nicolas Salamin (2923683)

August 2015

GenBank accession numbers for DNA sequence data of the 13 taxa in the family Primulaceae chloroplast...

Additional file 1: of Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

Dyfed Lloyd Evans (2862584)
Shailesh Joshi (1391158)
Jianping Wang (215292)

January 2019

List of Tripidium chloroplast amplification primers. List of the 13 primers used in amplifying the c...

Additional file 1: of Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers

Eugeniya Bondar (6296057)
Yuliya Putintseva (4724973)
Nataliya Oreshkova (6296060)
Konstantin Krutovsky (4724994)

February 2019

Table S1. Genetic variants identified in the Siberian larch chloroplast genome. (XLSX 24 kb

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Figure S1. The distribution and presence of simple sequence repeats (SSRs) in the cp genome of Oresi...

Additional file 4: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S2. Primer pairs designed for each detected polymorphic gSSRs within Oresitrophe and between O...

Additional file 3: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S1. The detail information of polymorphic gSSRs identified within Oresitrophe and between Ores...

Additional file 6: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S4. cpSSRs identified from comparative analysis of chloroplast genome for Oresitrophe and Mukd...

Additional file 1: of Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring

Sheng Zhu (5314430)
Meng Xu (62933)
Haoran Wang (272166)
Huixin Pan (5314427)
Guangping Wang (528995)
Minren Huang (346708)

May 2018

Table S1. The ratio of split-reads mapped to each cpDNA of six Populus species using Bowtie and BWA....

Additional file 1: of Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Wenqing Li (1421971)
Yanlei Liu (1430260)
Yong Yang (63842)
Xiaoman Xie (4070350)
Yizeng Lu (4109974)
Zhirong Yang (348765)
Xiaobai Jin (5795192)
Wenpan Dong (171490)
Zhili Suo (5795201)

September 2018

Figure S1. NJ trees of Diospyros taxa based on each of the ten chloroplast barcodes, showing the res...

Additional file 13 of Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)

Tong-Jian Liu (14176529)
Shu-Yan Zhang (16424495)
Lei Wei (18880)
Wei Lin (6475)
Hai-Fei Yan (11947395)
Gang Hao (134522)
Xue-Jun Ge (8949380)

July 2023

Additional file 13: Table S1. Samples, vouchers, and GenBank accessions used in this study. Table S2...

Additional file 1: of Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses

Sui Wang (6109667)
Chuanping Yang (413436)
Xiyang Zhao (721003)
Su Chen (663531)
Guan-Zheng Qu (413430)

December 2018

Table S1. Taxa and ID of the selected species. Table S2. The related information of primers. Table S...

Additional file 1: Table S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Abstract

Extracted data

Additional file 1: Table S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Abstract

Extracted data

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