Additional file 12: Figure S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Additional file 1: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

Ying Wu (19057)
Xianfeng Ma (416171)
Zhiyong Pan (722951)
Shiv Kale (841480)
Yi Song (105202)
Harlan King (722952)
Qiong Zhang (172309)
Christian Presley (5791664)
Xiuxin Deng (181062)
Cheng-I Wei (5791667)
Shunyuan Xiao (722953)

September 2018

Figure S1. A phylogenetic tree with divergence time of the eight powdery mildew (PM) genomes. Figure...

Additional file 12: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S11. Representatives of the genus Blumeria show less TE divergence than representatives of th...

Additional file 9: Figure S3. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

ClĂŠmence Plissonneau (4761663)
Fanny Hartmann (4761666)
Daniel Croll (325019)

January 2018

Gene ontology enrichment for biological process terms performed for singleton, accessory, and core g...

Additional file 16: of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

RXLR-like genes predicted in genome of Sclerospora graminicola and their expression levels during in...

Additional file 5: of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

Enrichment analysis of InterProScan domains between Sclerospora graminicola and related oomycetes. (...

Additional file 4: Table S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

Gene IDs for nitrogen and sulfur assimilation enzymes in Sclerospora graminicola and related oomycet...

Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi
Yukie Hiraka
Akira Abe
Hiroki Yaegashi
Satoshi Natsume
Hideko Kikuchi
Hiroki Takagi
Hiromasa Saitoh
Joe Win
Sophien Kamoun
Ryohei Terauchi

November 2017

Abstract Background Downy mildew, caused by the oomycete pathogen Sclerospora graminicola, is an eco...

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

Chandra Nayaka, S.
Shetty, H. S.
Satyavathi, C. Tara
Yadav, Rattan S.
Kishor, P. B. Kavi
Nagaraju, M.
Anoop, T. A.
Kumar, M. Milner
Kuriakose, Boney
Chakravartty, Navajeet
Katta, A. V. S. K. Mohan
Lachagari, V. B. Reddy
Singh, Om Vir
Sahu, Pranav Pankaj
Swati, Puranik
Kaushal, Pankaj
Rakesh, K. S.

December 2017

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet...

Additional file 5: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S4. Comparative visualization of the genomic loci harboring AVR a1 and AVR a13 in the Bgh iso...

Additional file 9: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S8. Distribution of SP and non-SP coding genes in Bgh DH14 scaffolds larger than 1 MB. (A) De...

Additional file 12: of Genome-wide analysis of glyoxalase-like gene families in grape (Vitis vinifera L.) and their expression profiling in response to downy mildew infection

Tiemei Li (482135)
Xin Cheng (179584)
Yuting Wang (434390)
Xiao Yin (800572)
Zhiqian Li (748426)
Ruiqi Liu (3873832)
Guotian Liu (668232)
Yuejin Wang (3072678)
Yan Xu (14594)

May 2019

Table S8. Primers used in expression analysis of glyoxalase-like gene families in grape. (DOCX 18 kb

Characterization of the genome of Sclerospora graminicola, the causal fungus of downy mildew of pearl millet

Sastry, J G
Sivaramakrishnan, S
Thakur, R P
Gupta, V S
Ranjekar, P K

January 1997

A genomic library of the most virulent pathotype path-6 (7042S) of S. graminicola, the causal fungus...

Additional file 5: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...

Additional file 11: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP ortholog...

Additional file 4: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...

Additional file 1: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

Ying Wu (19057)
Xianfeng Ma (416171)
Zhiyong Pan (722951)
Shiv Kale (841480)
Yi Song (105202)
Harlan King (722952)
Qiong Zhang (172309)
Christian Presley (5791664)
Xiuxin Deng (181062)
Cheng-I Wei (5791667)
Shunyuan Xiao (722953)

September 2018

Figure S1. A phylogenetic tree with divergence time of the eight powdery mildew (PM) genomes. Figure...

Additional file 12: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S11. Representatives of the genus Blumeria show less TE divergence than representatives of th...

Additional file 9: Figure S3. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

ClĂŠmence Plissonneau (4761663)
Fanny Hartmann (4761666)
Daniel Croll (325019)

January 2018

Gene ontology enrichment for biological process terms performed for singleton, accessory, and core g...

Additional file 16: of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

RXLR-like genes predicted in genome of Sclerospora graminicola and their expression levels during in...

Additional file 5: of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

Enrichment analysis of InterProScan domains between Sclerospora graminicola and related oomycetes. (...

Additional file 4: Table S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi (4611802)
Yukie Hiraka (4611808)
Akira Abe (432602)
Hiroki Yaegashi (432604)
Satoshi Natsume (432603)
Hideko Kikuchi (4611805)
Hiroki Takagi (432600)
Hiromasa Saitoh (165712)
Joe Win (6131)
Sophien Kamoun (6132)
Ryohei Terauchi (165768)

November 2017

Gene IDs for nitrogen and sulfur assimilation enzymes in Sclerospora graminicola and related oomycet...

Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Michie Kobayashi
Yukie Hiraka
Akira Abe
Hiroki Yaegashi
Satoshi Natsume
Hideko Kikuchi
Hiroki Takagi
Hiromasa Saitoh
Joe Win
Sophien Kamoun
Ryohei Terauchi

November 2017

Abstract Background Downy mildew, caused by the oomycete pathogen Sclerospora graminicola, is an eco...

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

Chandra Nayaka, S.
Shetty, H. S.
Satyavathi, C. Tara
Yadav, Rattan S.
Kishor, P. B. Kavi
Nagaraju, M.
Anoop, T. A.
Kumar, M. Milner
Kuriakose, Boney
Chakravartty, Navajeet
Katta, A. V. S. K. Mohan
Lachagari, V. B. Reddy
Singh, Om Vir
Sahu, Pranav Pankaj
Swati, Puranik
Kaushal, Pankaj
Rakesh, K. S.

December 2017

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet...

Additional file 5: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S4. Comparative visualization of the genomic loci harboring AVR a1 and AVR a13 in the Bgh iso...

Additional file 9: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S8. Distribution of SP and non-SP coding genes in Bgh DH14 scaffolds larger than 1 MB. (A) De...

Additional file 12: of Genome-wide analysis of glyoxalase-like gene families in grape (Vitis vinifera L.) and their expression profiling in response to downy mildew infection

Tiemei Li (482135)
Xin Cheng (179584)
Yuting Wang (434390)
Xiao Yin (800572)
Zhiqian Li (748426)
Ruiqi Liu (3873832)
Guotian Liu (668232)
Yuejin Wang (3072678)
Yan Xu (14594)

May 2019

Table S8. Primers used in expression analysis of glyoxalase-like gene families in grape. (DOCX 18 kb

Characterization of the genome of Sclerospora graminicola, the causal fungus of downy mildew of pearl millet

Sastry, J G
Sivaramakrishnan, S
Thakur, R P
Gupta, V S
Ranjekar, P K

January 1997

A genomic library of the most virulent pathotype path-6 (7042S) of S. graminicola, the causal fungus...

Additional file 5: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...

Additional file 11: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP ortholog...

Additional file 4: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...

Additional file 1: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

Ying Wu (19057)
Xianfeng Ma (416171)
Zhiyong Pan (722951)
Shiv Kale (841480)
Yi Song (105202)
Harlan King (722952)
Qiong Zhang (172309)
Christian Presley (5791664)
Xiuxin Deng (181062)
Cheng-I Wei (5791667)
Shunyuan Xiao (722953)

September 2018

Figure S1. A phylogenetic tree with divergence time of the eight powdery mildew (PM) genomes. Figure...

Additional file 12: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Lamprinos Frantzeskakis (5258396)
Barbara Kracher (3933719)
Stefan Kusch (3449618)
Makoto Yoshikawa-Maekawa (5258402)
Saskia Bauer (5258399)
Carsten Pedersen (258350)
Pietro Spanu (3124824)
Takaki Maekawa (159781)
Paul Schulze-Lefert (159823)
Ralph Panstruga (3449621)

May 2018

Figure S11. Representatives of the genus Blumeria show less TE divergence than representatives of th...

Additional file 9: Figure S3. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

ClĂŠmence Plissonneau (4761663)
Fanny Hartmann (4761666)
Daniel Croll (325019)

January 2018

Gene ontology enrichment for biological process terms performed for singleton, accessory, and core g...

Additional file 12: Figure S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Abstract

Extracted data

Additional file 12: Figure S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Abstract

Extracted data

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