RNA-sequencing data used to assess tissue and treatment specificity of the novel high and low GC gene predictions. (XLSX 34Â kb
The results from differential expression analyses for NAC and bZIP genes using DESeq2, EdgeR (glm mo...
Figure S3. GO annotation of 205 interacting partners of 7 selected genes into cellular compartments....
Predicted TF target overlap with ChIP-Seq confirmed binding genes for KN1, FEA4 and O2. The leaf, ro...
OrthoMCL orthogroups containing novel high and low GC gene predictions. OrthoMCL output listing the ...
List of MSU-RGAP genes that are not in the MAKER six HMMs annotation, functional descriptions and th...
Distribution of GC content, MAKER six HMMs gene predictions and novel genes predicted by the high an...
Venn diagram depicting the overlap between the rice GC-specific sixHMM annotation and IGRSP v7 annot...
AED curves from various MAKER annotation methods. Figure S1. AED curves of MAKER annotations of Oryz...
Background: Accurate structural annotation depends on well-trained gene prediction programs. Trainin...
Detail Gene ontology (GO) enrichment analysis of CNV genes. Genes were annotated by InterProScan to ...
Comparison between orthology relationships predicted by EnsemblPlants / Gramene platforms and by our...
Additional file 1: Figure S1. Prediction accuracy of sorghum phenotypes. Prediction accuracy (measur...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Supplementary material for the manuscript: Cell specificity of human regulatory annotations and the...
Table S5. The original RNA-seq data for GhGH3 expression pattern analysis. (XLSX 20âkb
The results from differential expression analyses for NAC and bZIP genes using DESeq2, EdgeR (glm mo...
Figure S3. GO annotation of 205 interacting partners of 7 selected genes into cellular compartments....
Predicted TF target overlap with ChIP-Seq confirmed binding genes for KN1, FEA4 and O2. The leaf, ro...
OrthoMCL orthogroups containing novel high and low GC gene predictions. OrthoMCL output listing the ...
List of MSU-RGAP genes that are not in the MAKER six HMMs annotation, functional descriptions and th...
Distribution of GC content, MAKER six HMMs gene predictions and novel genes predicted by the high an...
Venn diagram depicting the overlap between the rice GC-specific sixHMM annotation and IGRSP v7 annot...
AED curves from various MAKER annotation methods. Figure S1. AED curves of MAKER annotations of Oryz...
Background: Accurate structural annotation depends on well-trained gene prediction programs. Trainin...
Detail Gene ontology (GO) enrichment analysis of CNV genes. Genes were annotated by InterProScan to ...
Comparison between orthology relationships predicted by EnsemblPlants / Gramene platforms and by our...
Additional file 1: Figure S1. Prediction accuracy of sorghum phenotypes. Prediction accuracy (measur...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Supplementary material for the manuscript: Cell specificity of human regulatory annotations and the...
Table S5. The original RNA-seq data for GhGH3 expression pattern analysis. (XLSX 20âkb
The results from differential expression analyses for NAC and bZIP genes using DESeq2, EdgeR (glm mo...
Figure S3. GO annotation of 205 interacting partners of 7 selected genes into cellular compartments....
Predicted TF target overlap with ChIP-Seq confirmed binding genes for KN1, FEA4 and O2. The leaf, ro...
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