Additional file 16: Table S10. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Additional file 1 of Quantitative analysis of the blood transcriptome of young healthy pigs and its relationship with subsequent disease resilience

Kyu-Sang Lim (7504358)
Jian Cheng (48763)
Austin Putz (11270031)
Qian Dong (414788)
Xuechun Bai (8574702)
Hamid Beiki (3561875)
Christopher K. Tuggle (8414061)
Michael K. Dyck (8574714)
Pig Gen Canada (11270034)
Frederic Fortin (9407867)
John C. S. Harding (8574711)
Graham S. Plastow (8574717)
Jack C. M. Dekkers (9407870)

August 2021

Additional file 1: Fig. S1. Illustration of gene annotation, combining the Ensembl (ENS) pig referen...

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 2: Table S1. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The four significantly clustered profiles and the corresponding genes across four developmental stag...

Additional file 15: Table S9. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

QTLs in AnimalQTLdb for pigs (<10Â Mb) harbouring at least one ASE-SNPs. (XLSX 44 kb

Additional file 2: Table S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Genes annotated by sense and/or antisense probes found associated with local or distant eQTL-SNPs. (...

Additional file 8: Table S6. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Enrichement analysis of distant-associated genes in eGWAS by GOrilla. (XLSX 21 kb

Additional file 3: Figure S1. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. Esquerré (4684474)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. Estellé (4684489)

December 2017

Distribution of eQTL-SNPs along pig autosomal chromosomes. The histograms represent the distribution...

Additional file 5: Figure S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Distribution of ASE-SNPs along pig autosomal chromosomes. The histograms represent the distribution ...

Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Lemonnier, Gaëtan
Lecardonnel, Jerôme
Esquerré, Diane
Ramayo Caldas, Yuliaxis
Mercat, Marie-José
Rogel-Gaillard, Claire
Estelle Fabrellas, Jordi

January 2017

Background: Efforts to improve sustainability in livestock production systems have focused on two ob...

Additional file 1 of Genetic analysis of the blood transcriptome of young healthy pigs to improve disease resilience

Kyu-Sang Lim (7504358)
Jian Cheng (48763)
Christopher Tuggle (3439895)
Michael Dyck (6002189)
PigGen Canada (8574720)
Frederic Fortin (9407867)
John Harding (3445103)
Graham Plastow (174335)
Jack Dekkers (17624971)

December 2023

Additional file 1: Figure S1. Relationship of the estimates of heritability of gene expression with ...

Additional file 16: Figure S11. of A high-quality annotated transcriptome of swine peripheral blood

Haibo Liu (171264)
Timothy Smith (45977)
Dan Nonneman (45339)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

June 2017

Comparison of PTs of the integrated transcriptome assembly to the IsoSeq cDNA reads, transcripts ann...

Additional file 7: Figure S2. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

Haibo Liu (171264)
Yet Nguyen (3439898)
Dan Nettleton (6085)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

January 2016

Subnetwork consisting of differentially expressed genes regulated by the inferred upstream regulator...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

Additional file 2: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

Deborah Velez-Irizarry (6173753)
Sebastian Casiro (6173756)
Kaitlyn Daza (6173759)
Ronald Bates (6173762)
Nancy Raney (6173765)
Juan Steibel (6173768)
Catherine Ernst (5766908)

January 2019

Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 1 of Quantitative analysis of the blood transcriptome of young healthy pigs and its relationship with subsequent disease resilience

Kyu-Sang Lim (7504358)
Jian Cheng (48763)
Austin Putz (11270031)
Qian Dong (414788)
Xuechun Bai (8574702)
Hamid Beiki (3561875)
Christopher K. Tuggle (8414061)
Michael K. Dyck (8574714)
Pig Gen Canada (11270034)
Frederic Fortin (9407867)
John C. S. Harding (8574711)
Graham S. Plastow (8574717)
Jack C. M. Dekkers (9407870)

August 2021

Additional file 1: Fig. S1. Illustration of gene annotation, combining the Ensembl (ENS) pig referen...

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 2: Table S1. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The four significantly clustered profiles and the corresponding genes across four developmental stag...

Additional file 15: Table S9. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

QTLs in AnimalQTLdb for pigs (<10Â Mb) harbouring at least one ASE-SNPs. (XLSX 44 kb

Additional file 2: Table S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Genes annotated by sense and/or antisense probes found associated with local or distant eQTL-SNPs. (...

Additional file 8: Table S6. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Enrichement analysis of distant-associated genes in eGWAS by GOrilla. (XLSX 21 kb

Additional file 3: Figure S1. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. Esquerré (4684474)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. Estellé (4684489)

December 2017

Distribution of eQTL-SNPs along pig autosomal chromosomes. The histograms represent the distribution...

Additional file 5: Figure S2. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

T. Maroilley (4684477)
G. Lemonnier (2370415)
J. Lecardonnel (4684486)
D. EsquerrĂŠ (4684498)
Y. Ramayo-Caldas (4684483)
M. Mercat (4684492)
C. Rogel-Gaillard (4684480)
J. EstellĂŠ (4684495)

December 2017

Distribution of ASE-SNPs along pig autosomal chromosomes. The histograms represent the distribution ...

Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Lemonnier, Gaëtan
Lecardonnel, Jerôme
Esquerré, Diane
Ramayo Caldas, Yuliaxis
Mercat, Marie-José
Rogel-Gaillard, Claire
Estelle Fabrellas, Jordi

January 2017

Background: Efforts to improve sustainability in livestock production systems have focused on two ob...

Additional file 1 of Genetic analysis of the blood transcriptome of young healthy pigs to improve disease resilience

Kyu-Sang Lim (7504358)
Jian Cheng (48763)
Christopher Tuggle (3439895)
Michael Dyck (6002189)
PigGen Canada (8574720)
Frederic Fortin (9407867)
John Harding (3445103)
Graham Plastow (174335)
Jack Dekkers (17624971)

December 2023

Additional file 1: Figure S1. Relationship of the estimates of heritability of gene expression with ...

Additional file 16: Figure S11. of A high-quality annotated transcriptome of swine peripheral blood

Haibo Liu (171264)
Timothy Smith (45977)
Dan Nonneman (45339)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

June 2017

Comparison of PTs of the integrated transcriptome assembly to the IsoSeq cDNA reads, transcripts ann...

Additional file 7: Figure S2. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

Haibo Liu (171264)
Yet Nguyen (3439898)
Dan Nettleton (6085)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

January 2016

Subnetwork consisting of differentially expressed genes regulated by the inferred upstream regulator...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

Additional file 2: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

Deborah Velez-Irizarry (6173753)
Sebastian Casiro (6173756)
Kaitlyn Daza (6173759)
Ronald Bates (6173762)
Nancy Raney (6173765)
Juan Steibel (6173768)
Catherine Ernst (5766908)

January 2019

Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 1 of Quantitative analysis of the blood transcriptome of young healthy pigs and its relationship with subsequent disease resilience

Kyu-Sang Lim (7504358)
Jian Cheng (48763)
Austin Putz (11270031)
Qian Dong (414788)
Xuechun Bai (8574702)
Hamid Beiki (3561875)
Christopher K. Tuggle (8414061)
Michael K. Dyck (8574714)
Pig Gen Canada (11270034)
Frederic Fortin (9407867)
John C. S. Harding (8574711)
Graham S. Plastow (8574717)
Jack C. M. Dekkers (9407870)

August 2021

Additional file 1: Fig. S1. Illustration of gene annotation, combining the Ensembl (ENS) pig referen...

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 2: Table S1. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The four significantly clustered profiles and the corresponding genes across four developmental stag...

Additional file 16: Table S10. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Abstract

Extracted data

Additional file 16: Table S10. of Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Abstract

Extracted data

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