Additional file 10: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

Additional file 3: Figure S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Comparison of orthogroup size distribution between the current de novo assembly for Atlantic salmon,...

Sampling the Skin Transcriptome of the North Atlantic Right Whale

J. L. Ierardi
A. Mancia
J. McMillan
M. L. Lundqvist
T. A. Romano
J. P. Wise
G. W. Warr

January 2009

As an initial step in de!ning the transcriptome of the North Atlantic right whale (Eubalaena glacial...

Additional file 6: Table S4. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Number and proportion of gene ontology annotations assigned to each speciesâ transcriptome. (PDF 2...

De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

Alexey А. Moskalev
Anna V. Kudryavtseva
Alexander S. Graphodatsky
Violetta R. Beklemisheva
Natalya A. Serdyukova
Konstantin V. Krutovsky
Vadim V. Sharov
Ivan V. Kulakovskiy
Andrey S. Lando
Artem S. Kasianov
Dmitry A. Kuzmin
Yuliya A. Putintseva
Sergey I. Feranchuk
Mikhail V. Shaposhnikov
Vadim E. Fraifeld
Dmitri Toren
Anastasia V. Snezhkina
Vasily V. Sitnik

December 2017

Abstract Background Gray whale, Eschrichtius robustus (E. robustus), is a single member of the famil...

Additional file 1: of The inference of gray whale (Eschrichtius robustus) historical population attributes from whole-genome sequences

Anna Brüniche-Olsen (2549617)
Rick Westerman (23760)
Zuzanna Kazmierczyk (5350901)
Vladimir Vertyankin (5350895)
Celine Godard-Codding (5350898)
John Bickham (3277377)
J. DeWoody (3412913)

June 2018

Table S1. Information on raw reads filtering statistics. Paired-end libraries were sequenced on an I...

Eschrichtius robustus genome annotation

DeWoody, J. Andrew
Fernandez, Nadia B.
Brüniche-Olsen, Anna
Antonides, Jennifer D.
Doyle, Jacqueline M.
San Miguel, Phillip
Westerman, Rick
Vertyankin, Vladimir V.
Godard-Codding, Céline A.J.
Bickham, John W.

September 2017

Gray whale (Eschrichtius robustus) genome annotation in gff format. MAKER 2.28b was used to annotate...

Data from: Characterization of the gray whale Eschrichtius robustus genome and a genotyping array based on single-nucleotide polymorphisms in candidate genes

DeWoody, J. Andrew
Fernandez, Nadia B.
Brüniche-Olsen, Anna
Antonides, Jennifer D.
Doyle, Jacqueline M.
San Miguel, Phillip
Westerman, Rick
Vertyankin, Vladimir V.
Godard-Codding, Céline A.J.
Bickham, John W.

Genetic and genomic approaches have much to offer in terms of ecology, evolution, and conservation. ...

The Genome of the Beluga Whale (Delphinapterus leucas)

Jones, Steven J. M.
Taylor, Gregory A.
Chan, Simon
Warren, René L.
Hammond, S. Austin
Bilobram, Steven
Mordecai, Gideon
Suttle, Curtis A.
Miller, Kristina M.
Schulze, Angela
Chan, Amy M.
Jones, Samantha J.
Tse, Kane
Li, Irene
Cheung, Dorothy
Mungall, Karen L.
Choo, Caleb
Ally, Adrian
Dhalla, Noreen
Tam, Angela K. Y.
Troussard, Armelle
Kirk, Heather
Pandoh, Pawan
Paulino, Daniel
Coope, Robin J. N.
Mungall, Andrew J.
Moore, Richard
Zhao, Yongjun
Birol, Inanc
Ma, Yussanne
Marra, Marco, 1966-
Haulena, Martin

April 2019

The beluga whale is a cetacean that inhabits arctic and subarctic regions, and is the only living me...

Additional file 1: of De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Yi Lan (3356099)
Jin Sun (117866)
Ting Xu (215531)
Chong Chen (360710)
Renmao Tian (3244935)
Jian-Wen Qiu (416567)
Pei-Yuan Qian (124761)

May 2018

Table S1. Codon usage among Aldrovandia affinis, Astyanax mexicanus, Gadus morhua and Xiphophorus ma...

Eschrichtius robustus annotated transcripts

J. Andrew DeWoody (368895)
Nadia B. Fernandez (3258321)
Anna Brüniche-Olsen (2549617)
Jennifer D. Antonides (5025707)
Jacqueline M. Doyle (554786)
Phillip San Miguel (151849)
Rick Westerman (23760)
Vladimir V. Vertyankin (745849)
Céline A.J. Godard-Codding (5025710)
John W. Bickham (16419)

March 2018

Gray whale (Eschrichtius robustus) annotated transcripts from MAKER 2.28b in fasta format. Assembly ...

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Chih-Hung Chou (1777063)
Hsi-Yuan Huang (14037)
Wei-Chih Huang (650345)
Sheng-Da Hsu (14220)
Chung-Der Hsiao (163384)
Chia-Yu Liu (532886)
Yu-Hung Chen (598277)
Yu-Chen Liu (405361)
Wei-Yun Huang (5197994)
Meng-Lin Lee (5197997)
Yi-Chang Chen (2020816)
Hsien-Da Huang (1748)

May 2018

The cumulative publications of related articles of aquatic animal in PubMed. Table S1. RNA-seq datas...

Additional file 2: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Figure representing the number of transcripts obtained after the assembly of increasing number of ma...

Additional file 1: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Table listing Mytilus galloprovincialis transcripts, including the sequence, length, RPKM, descripti...

Additional file 1: of Transcriptomic response of the Antarctic pteropod Limacina helicina antarctica to ocean acidification

Kevin Johnson (684369)
Gretchen Hofmann (3198063)

October 2017

Transcriptome assembly and annotation statistics. This file provides further assembly and annotation...

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 3: Figure S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Comparison of orthogroup size distribution between the current de novo assembly for Atlantic salmon,...

Sampling the Skin Transcriptome of the North Atlantic Right Whale

J. L. Ierardi
A. Mancia
J. McMillan
M. L. Lundqvist
T. A. Romano
J. P. Wise
G. W. Warr

January 2009

As an initial step in de!ning the transcriptome of the North Atlantic right whale (Eubalaena glacial...

Additional file 6: Table S4. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Number and proportion of gene ontology annotations assigned to each speciesâ transcriptome. (PDF 2...

De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

Alexey А. Moskalev
Anna V. Kudryavtseva
Alexander S. Graphodatsky
Violetta R. Beklemisheva
Natalya A. Serdyukova
Konstantin V. Krutovsky
Vadim V. Sharov
Ivan V. Kulakovskiy
Andrey S. Lando
Artem S. Kasianov
Dmitry A. Kuzmin
Yuliya A. Putintseva
Sergey I. Feranchuk
Mikhail V. Shaposhnikov
Vadim E. Fraifeld
Dmitri Toren
Anastasia V. Snezhkina
Vasily V. Sitnik

December 2017

Abstract Background Gray whale, Eschrichtius robustus (E. robustus), is a single member of the famil...

Additional file 1: of The inference of gray whale (Eschrichtius robustus) historical population attributes from whole-genome sequences

Anna Brüniche-Olsen (2549617)
Rick Westerman (23760)
Zuzanna Kazmierczyk (5350901)
Vladimir Vertyankin (5350895)
Celine Godard-Codding (5350898)
John Bickham (3277377)
J. DeWoody (3412913)

June 2018

Table S1. Information on raw reads filtering statistics. Paired-end libraries were sequenced on an I...

Eschrichtius robustus genome annotation

DeWoody, J. Andrew
Fernandez, Nadia B.
Brüniche-Olsen, Anna
Antonides, Jennifer D.
Doyle, Jacqueline M.
San Miguel, Phillip
Westerman, Rick
Vertyankin, Vladimir V.
Godard-Codding, Céline A.J.
Bickham, John W.

September 2017

Gray whale (Eschrichtius robustus) genome annotation in gff format. MAKER 2.28b was used to annotate...

Data from: Characterization of the gray whale Eschrichtius robustus genome and a genotyping array based on single-nucleotide polymorphisms in candidate genes

DeWoody, J. Andrew
Fernandez, Nadia B.
Brüniche-Olsen, Anna
Antonides, Jennifer D.
Doyle, Jacqueline M.
San Miguel, Phillip
Westerman, Rick
Vertyankin, Vladimir V.
Godard-Codding, Céline A.J.
Bickham, John W.

Genetic and genomic approaches have much to offer in terms of ecology, evolution, and conservation. ...

The Genome of the Beluga Whale (Delphinapterus leucas)

Jones, Steven J. M.
Taylor, Gregory A.
Chan, Simon
Warren, René L.
Hammond, S. Austin
Bilobram, Steven
Mordecai, Gideon
Suttle, Curtis A.
Miller, Kristina M.
Schulze, Angela
Chan, Amy M.
Jones, Samantha J.
Tse, Kane
Li, Irene
Cheung, Dorothy
Mungall, Karen L.
Choo, Caleb
Ally, Adrian
Dhalla, Noreen
Tam, Angela K. Y.
Troussard, Armelle
Kirk, Heather
Pandoh, Pawan
Paulino, Daniel
Coope, Robin J. N.
Mungall, Andrew J.
Moore, Richard
Zhao, Yongjun
Birol, Inanc
Ma, Yussanne
Marra, Marco, 1966-
Haulena, Martin

April 2019

The beluga whale is a cetacean that inhabits arctic and subarctic regions, and is the only living me...

Additional file 1: of De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Yi Lan (3356099)
Jin Sun (117866)
Ting Xu (215531)
Chong Chen (360710)
Renmao Tian (3244935)
Jian-Wen Qiu (416567)
Pei-Yuan Qian (124761)

May 2018

Table S1. Codon usage among Aldrovandia affinis, Astyanax mexicanus, Gadus morhua and Xiphophorus ma...

Eschrichtius robustus annotated transcripts

J. Andrew DeWoody (368895)
Nadia B. Fernandez (3258321)
Anna Brüniche-Olsen (2549617)
Jennifer D. Antonides (5025707)
Jacqueline M. Doyle (554786)
Phillip San Miguel (151849)
Rick Westerman (23760)
Vladimir V. Vertyankin (745849)
Céline A.J. Godard-Codding (5025710)
John W. Bickham (16419)

March 2018

Gray whale (Eschrichtius robustus) annotated transcripts from MAKER 2.28b in fasta format. Assembly ...

Additional file 1: Figure S1. of The aquatic animalsâ transcriptome resource for comparative functional analysis

Chih-Hung Chou (1777063)
Hsi-Yuan Huang (14037)
Wei-Chih Huang (650345)
Sheng-Da Hsu (14220)
Chung-Der Hsiao (163384)
Chia-Yu Liu (532886)
Yu-Hung Chen (598277)
Yu-Chen Liu (405361)
Wei-Yun Huang (5197994)
Meng-Lin Lee (5197997)
Yi-Chang Chen (2020816)
Hsien-Da Huang (1748)

May 2018

The cumulative publications of related articles of aquatic animal in PubMed. Table S1. RNA-seq datas...

Additional file 2: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Figure representing the number of transcripts obtained after the assembly of increasing number of ma...

Additional file 1: of RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Rebeca Moreira (170749)
Patricia Pereiro (164424)
Carlos Canchaya (255570)
David Posada (19469)
Antonio Figueras (82634)
Beatriz Novoa (82631)

September 2015

Table listing Mytilus galloprovincialis transcripts, including the sequence, length, RPKM, descripti...

Additional file 1: of Transcriptomic response of the Antarctic pteropod Limacina helicina antarctica to ocean acidification

Kevin Johnson (684369)
Gretchen Hofmann (3198063)

October 2017

Transcriptome assembly and annotation statistics. This file provides further assembly and annotation...

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 3: Figure S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Comparison of orthogroup size distribution between the current de novo assembly for Atlantic salmon,...

Sampling the Skin Transcriptome of the North Atlantic Right Whale

J. L. Ierardi
A. Mancia
J. McMillan
M. L. Lundqvist
T. A. Romano
J. P. Wise
G. W. Warr

January 2009

As an initial step in de!ning the transcriptome of the North Atlantic right whale (Eubalaena glacial...

Additional file 6: Table S4. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

Madeleine Carruthers (4745466)
Andrey Yurchenko (3460652)
Julian Augley (4745472)
Colin Adams (4745469)
Pawel Herzyk (4373)
Kathryn Elmer (3525650)

January 2018

Number and proportion of gene ontology annotations assigned to each speciesâ transcriptome. (PDF 2...

Additional file 10: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

Abstract

Extracted data

Additional file 10: of De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus

Abstract

Extracted data

Related items

Related items