Additional file 7: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Additional file 10: Table S8. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched KEGG pathways among genes containing missense SNPs or stop gained/loss variants in both Sma...

Additional file 3: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Additional candidate genes top-ranked in selected regions of 15 Russian sheep breeds. (XLSX 11 kb

Additional file 2: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Putatively selected regions in genomes of 15 Russian sheep breeds as detected by the hapFLK and DCMS...

Additional file 4: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

FLK and hapFLK results. FLK and hapFLK regions under selection for FLK and hapFLK results. (XLS 102Â...

Additional file 1: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Cross entropy criterion. Cross entropy criterion for estimating number of ancestral populations in F...

Additional file 11: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Size of signatures of selection detected. Regions detected using 50Â K SNPs in blue and regions dete...

Additional file 12: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Mutations in MC1R. Mutations found in MC1R region in Noire du Velay, Romanov and Suffolk sheep. (PDF...

Additional file 17: Figure S5. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

The distributions of heterozygosity (H P) and the average fixation index (F ST) between any two of t...

Additional file 22: Table S17. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes located in the selection regions with Z(F ST)M-Dâ>â4. (DOC 145 kb

Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Rochus, Christina
Tortereau, Flavie
Plisson-Petit, Florence
Restoux, Gwendal
Moreno-Romieux, Carole
Tosser-Klopp, Gwenola
Servin, Bertrand

January 2018

One of the approaches to detect genetics variants affecting fitness traits is to identify their surr...

MOESM6 of Genome-wide scan for runs of homozygosity identifies potential candidate genes associated with local adaptation in Valle del Belice sheep

Salvatore Mastrangelo (4590580)
Marco Tolone (4590574)
Maria Sardina (3399023)
Gianluca Sottile (4590577)
Anna Sutera (4590586)
Rosalia Di Gerlando (4590583)
Baldassare Portolano (2862608)

November 2017

Additional file 6: Table S2. List of 107 potential candidate genes under directional selection in th...

Additional file 7: Table S6. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes containing missense SNPs or stop gained/loss variants in both Small-ta...

Additional file 20: Table S15. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes located in the selection regions with Z(F ST)M-S > 4 and Z(F ST)M-D > ...

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest diversifying selection signals detected in the studied pig breed...

MOESM3 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 3: Table S1. Environmental variables considered for the landscape genomic analysis. ...

Additional file 10: Table S8. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched KEGG pathways among genes containing missense SNPs or stop gained/loss variants in both Sma...

Additional file 3: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Additional candidate genes top-ranked in selected regions of 15 Russian sheep breeds. (XLSX 11 kb

Additional file 2: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Putatively selected regions in genomes of 15 Russian sheep breeds as detected by the hapFLK and DCMS...

Additional file 4: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

FLK and hapFLK results. FLK and hapFLK regions under selection for FLK and hapFLK results. (XLS 102Â...

Additional file 1: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Cross entropy criterion. Cross entropy criterion for estimating number of ancestral populations in F...

Additional file 11: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Size of signatures of selection detected. Regions detected using 50Â K SNPs in blue and regions dete...

Additional file 12: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus (3703267)
Flavie Tortereau (4787103)
Florence Plisson-Petit (4787100)
Gwendal Restoux (214062)
Carole Moreno-Romieux (4787106)
Gwenola Tosser-Klopp (88023)
Bertrand Servin (77573)

January 2018

Mutations in MC1R. Mutations found in MC1R region in Noire du Velay, Romanov and Suffolk sheep. (PDF...

Additional file 17: Figure S5. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

The distributions of heterozygosity (H P) and the average fixation index (F ST) between any two of t...

Additional file 22: Table S17. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes located in the selection regions with Z(F ST)M-Dâ>â4. (DOC 145 kb

Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Rochus, Christina
Tortereau, Flavie
Plisson-Petit, Florence
Restoux, Gwendal
Moreno-Romieux, Carole
Tosser-Klopp, Gwenola
Servin, Bertrand

January 2018

One of the approaches to detect genetics variants affecting fitness traits is to identify their surr...

MOESM6 of Genome-wide scan for runs of homozygosity identifies potential candidate genes associated with local adaptation in Valle del Belice sheep

Salvatore Mastrangelo (4590580)
Marco Tolone (4590574)
Maria Sardina (3399023)
Gianluca Sottile (4590577)
Anna Sutera (4590586)
Rosalia Di Gerlando (4590583)
Baldassare Portolano (2862608)

November 2017

Additional file 6: Table S2. List of 107 potential candidate genes under directional selection in th...

Additional file 7: Table S6. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes containing missense SNPs or stop gained/loss variants in both Small-ta...

Additional file 20: Table S15. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched GO terms among genes located in the selection regions with Z(F ST)M-S > 4 and Z(F ST)M-D > ...

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest diversifying selection signals detected in the studied pig breed...

MOESM3 of Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini (731812)
Bertrand Servin (77573)
Andrea Talenti (4171039)
Estelle Rochat (5250493)
Eui Kim (5986136)
Claire Oget (5986139)
Isabelle Palhière (512759)
Alessandra Crisà (449807)
Gennaro Catillo (3863749)
Roberto Steri (3563927)
Marcel Amills (168991)
Licia Colli (159403)
Gabriele Marras (3563912)
Marco Milanesi (3154470)
Ezequiel Nicolazzi (3504278)
Benjamin Rosen (791093)
Curtis Tassell (5986148)
Bernt Guldbrandtsen (340532)
Tad Sonstegard (392288)
Gwenola Tosser-Klopp (88023)
Alessandra Stella (28791)
Max Rothschild (3569351)
Stéphane Joost (517052)
Paola Crepaldi (517054)

November 2018

Additional file 3: Table S1. Environmental variables considered for the landscape genomic analysis. ...

Additional file 10: Table S8. of Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

Zhaohua Liu (3151116)
Zhibin Ji (120421)
Guizhi Wang (120423)
Tianle Chao (527931)
Lei Hou (274359)
Jianmin Wang (59025)

November 2016

Enriched KEGG pathways among genes containing missense SNPs or stop gained/loss variants in both Sma...

Additional file 3: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Additional candidate genes top-ranked in selected regions of 15 Russian sheep breeds. (XLSX 11 kb

Additional file 2: of High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

Andrey Yurchenko (3460652)
Tatiana Deniskova (5279753)
Nikolay Yudin (4724928)
Arsen Dotsev (5279750)
Timur Khamiruev (6678215)
Marina Selionova (5279744)
Sergey Egorov (6678218)
Henry Reyer (137619)
Klaus Wimmers (82199)
Gottfried Brem (398090)
Natalia Zinovieva (4453834)
Denis Larkin (3569240)

May 2019

Putatively selected regions in genomes of 15 Russian sheep breeds as detected by the hapFLK and DCMS...

Additional file 7: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Abstract

Extracted data

Additional file 7: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Abstract

Extracted data

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