Additional file 3: Table S3. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 3: of Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola

Margaret Worthington (6206363)
Masumi Ebina (3709873)
Naoki Yamanaka (270793)
Christopher Heffelfinger (6206366)
Constanza Quintero (731953)
Yeny Zapata (6206369)
Juan Perez (5652907)
Michael Selvaraj (6206372)
Manabu Ishitani (40986)
Jorge Duitama (418597)
Juan Hoz (6206375)
Idupulapati Rao (3605258)
Stephen Dellaporta (6206378)
Joe Tohme (40985)
Jacobo Arango (261546)

January 2019

Table S3. Depth of genotyping-by-sequencing read coverage in the CIAT 26146 x CIAT 16888 mapping pop...

Additional file 3: Table S1. of Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes

Wai Ho (3759922)
Hui Chai (1792744)
Presidor Kendabie (3759919)
Nariman Ahmad (3759916)
Jaeyres Jani (3759925)
Festo Massawe (849089)
Andrzej Kilian (43634)
Sean Mayes (849090)

February 2017

Sequences of DArTseq markers in each linkage groups and their SNP positions. (XLSX 45kb

Additional file 5: Figure S2. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 8: Figure S5. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 4: Figure S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 1: Table S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Species used in this study along with accession numbers. PI and W6 numbers are from United States De...

Data from: Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Eriksson, Jonna Sofia
Sousa, Filipe de
Bertrand, Yann J.K.
Antonelli, Alexandre
Oxelman, Bengt
Pfeil, Bernard E.

January 2018

Background: Whole genome duplication plays a central role in plant evolution. There are two main cla...

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna S. Eriksson
Filipe de Sousa
Yann J. K. Bertrand
Alexandre Antonelli
Bengt Oxelman
Bernard E. Pfeil

January 2018

Abstract Background Whole genome duplication plays a central role in plant evolution. There are two ...

Additional file 3: of Cytogenetic and molecular genotyping in the allotetraploid Festuca pratensis × Lolium perenne hybrids

Joanna Majka (3156249)
Katarzyna Bzdęga (6701228)
Agnieszka Janiak (2617589)
Hanna Ćwiek-Kupczyńska (3433268)
Paweł Krajewski (217712)
Tomasz Książczyk (3092472)
Zbigniew Zwierzykowski (6701231)

May 2019

Table S2. The Polymorphism Information Content (PIC) calculated for individual ISSR primer and the P...

Additional file 3: Figure S3. of Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

João Maldonado dos Santos (3546500)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Saad Khan (296295)
Yang Liu (4829)
Juexin Wang (213596)
Tri Vuong (3397577)
Marcelo Oliveira (3546488)
Francismar Marcelino-Guimarães (3546503)
Dong Xu (1234428)
Henry Nguyen (493314)
Ricardo Abdelnoor (3546497)

February 2016

Copy number variation for each Brazilian soybean line used in this study. (PNG 144 kb

Additional file 3: of Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes

Peng Zhou (116747)
Kevin Silverstein (3580874)
Thiruvarangan Ramaraj (3240726)
Joseph Guhlin (3864577)
Roxanne Denny (417309)
Junqi Liu (3864574)
Andrew Farmer (6125)
Kelly Steele (3293451)
Robert Stupar (3398648)
Jason Miller (791094)
Peter Tiffin (104127)
Joann Mudge (140254)
Nevin Young (3864571)

March 2017

Supporting data file S1 (Excel spreadsheet listing the member counts of different gene families incl...

Medicago truncatula genetic data

Zachariah Gompert (195300)
Megan Brady (6617066)
Farzaneh Chalyavi (4168300)
Tara Saley (6617069)
Casey Philbin (5027885)
Matthew Tucker (3312306)
Matthew Forister (3260835)
Lauren Lucas (3288597)

April 2019

This csv files contains the genotype estimates for the Medicago truncatula lines formatted for analy...

Additional file 3: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

Xutong Wang (5929328)
Liyang Chen (6279566)
Jianxin Ma (430457)

January 2019

Table S2. Proportions of introgressed fragments in chromosomal arms and pericentromeric regions in t...

Additional file 3: Table S3. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

Andrew Heidel (3474860)
Christiane Kiefer (165100)
George Coupland (110848)
Laura Rose (749727)

November 2016

Provides Genbank accession numbers for A. alpina genes and Phytozome V9 identifiers for A. lyrata ge...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 3: of Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola

Margaret Worthington (6206363)
Masumi Ebina (3709873)
Naoki Yamanaka (270793)
Christopher Heffelfinger (6206366)
Constanza Quintero (731953)
Yeny Zapata (6206369)
Juan Perez (5652907)
Michael Selvaraj (6206372)
Manabu Ishitani (40986)
Jorge Duitama (418597)
Juan Hoz (6206375)
Idupulapati Rao (3605258)
Stephen Dellaporta (6206378)
Joe Tohme (40985)
Jacobo Arango (261546)

January 2019

Table S3. Depth of genotyping-by-sequencing read coverage in the CIAT 26146 x CIAT 16888 mapping pop...

Additional file 3: Table S1. of Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes

Wai Ho (3759922)
Hui Chai (1792744)
Presidor Kendabie (3759919)
Nariman Ahmad (3759916)
Jaeyres Jani (3759925)
Festo Massawe (849089)
Andrzej Kilian (43634)
Sean Mayes (849090)

February 2017

Sequences of DArTseq markers in each linkage groups and their SNP positions. (XLSX 45kb

Additional file 5: Figure S2. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 8: Figure S5. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 4: Figure S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 1: Table S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Species used in this study along with accession numbers. PI and W6 numbers are from United States De...

Data from: Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Eriksson, Jonna Sofia
Sousa, Filipe de
Bertrand, Yann J.K.
Antonelli, Alexandre
Oxelman, Bengt
Pfeil, Bernard E.

January 2018

Background: Whole genome duplication plays a central role in plant evolution. There are two main cla...

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna S. Eriksson
Filipe de Sousa
Yann J. K. Bertrand
Alexandre Antonelli
Bengt Oxelman
Bernard E. Pfeil

January 2018

Abstract Background Whole genome duplication plays a central role in plant evolution. There are two ...

Additional file 3: of Cytogenetic and molecular genotyping in the allotetraploid Festuca pratensis × Lolium perenne hybrids

Joanna Majka (3156249)
Katarzyna Bzdęga (6701228)
Agnieszka Janiak (2617589)
Hanna Ćwiek-Kupczyńska (3433268)
Paweł Krajewski (217712)
Tomasz Książczyk (3092472)
Zbigniew Zwierzykowski (6701231)

May 2019

Table S2. The Polymorphism Information Content (PIC) calculated for individual ISSR primer and the P...

Additional file 3: Figure S3. of Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

João Maldonado dos Santos (3546500)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Saad Khan (296295)
Yang Liu (4829)
Juexin Wang (213596)
Tri Vuong (3397577)
Marcelo Oliveira (3546488)
Francismar Marcelino-Guimarães (3546503)
Dong Xu (1234428)
Henry Nguyen (493314)
Ricardo Abdelnoor (3546497)

February 2016

Copy number variation for each Brazilian soybean line used in this study. (PNG 144 kb

Additional file 3: of Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes

Peng Zhou (116747)
Kevin Silverstein (3580874)
Thiruvarangan Ramaraj (3240726)
Joseph Guhlin (3864577)
Roxanne Denny (417309)
Junqi Liu (3864574)
Andrew Farmer (6125)
Kelly Steele (3293451)
Robert Stupar (3398648)
Jason Miller (791094)
Peter Tiffin (104127)
Joann Mudge (140254)
Nevin Young (3864571)

March 2017

Supporting data file S1 (Excel spreadsheet listing the member counts of different gene families incl...

Medicago truncatula genetic data

Zachariah Gompert (195300)
Megan Brady (6617066)
Farzaneh Chalyavi (4168300)
Tara Saley (6617069)
Casey Philbin (5027885)
Matthew Tucker (3312306)
Matthew Forister (3260835)
Lauren Lucas (3288597)

April 2019

This csv files contains the genotype estimates for the Medicago truncatula lines formatted for analy...

Additional file 3: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

Xutong Wang (5929328)
Liyang Chen (6279566)
Jianxin Ma (430457)

January 2019

Table S2. Proportions of introgressed fragments in chromosomal arms and pericentromeric regions in t...

Additional file 3: Table S3. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

Andrew Heidel (3474860)
Christiane Kiefer (165100)
George Coupland (110848)
Laura Rose (749727)

November 2016

Provides Genbank accession numbers for A. alpina genes and Phytozome V9 identifiers for A. lyrata ge...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 3: of Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola

Margaret Worthington (6206363)
Masumi Ebina (3709873)
Naoki Yamanaka (270793)
Christopher Heffelfinger (6206366)
Constanza Quintero (731953)
Yeny Zapata (6206369)
Juan Perez (5652907)
Michael Selvaraj (6206372)
Manabu Ishitani (40986)
Jorge Duitama (418597)
Juan Hoz (6206375)
Idupulapati Rao (3605258)
Stephen Dellaporta (6206378)
Joe Tohme (40985)
Jacobo Arango (261546)

January 2019

Table S3. Depth of genotyping-by-sequencing read coverage in the CIAT 26146 x CIAT 16888 mapping pop...

Additional file 3: Table S1. of Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes

Wai Ho (3759922)
Hui Chai (1792744)
Presidor Kendabie (3759919)
Nariman Ahmad (3759916)
Jaeyres Jani (3759925)
Festo Massawe (849089)
Andrzej Kilian (43634)
Sean Mayes (849090)

February 2017

Sequences of DArTseq markers in each linkage groups and their SNP positions. (XLSX 45kb

Additional file 3: Table S3. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Abstract

Extracted data

Additional file 3: Table S3. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Abstract

Extracted data

Related items

Related items