Additional file 5: Figure S2. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Additional file 4: Figure S1. of Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations

Li Zhang (8200)
Christopher Dietrich (801833)
Daozheng Qin (801832)

July 2016

Estimated number of genetic clusters obtained with Structure for K value ranging from 1 to 10 using ...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 4: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

Laurent Brottier (5055641)
Clémence Chaintreuil (412783)
Paul Simion (3309834)
Céline Scornavacca (6055568)
Ronan Rivallan (118115)
Pierre Mournet (3177897)
Lionel Moulin (412786)
Gwilym Lewis (5055650)
Joël Fardoux (2155249)
Spencer Brown (414988)
Mario Gomez-Pacheco (5055644)
Mickaël Bourges (5055635)
Catherine Hervouet (123895)
Mathieu Gueye (6055571)
Robin Duponnois (4603774)
Heriniaina Ramanankierana (2835449)
Herizo Randriambanona (5055653)
Hervé Vandrot (5055656)
Maria Zabaleta (6055574)
Maitrayee DasGupta (6055577)
Angélique D’Hont (428420)
Eric Giraud (348644)
Jean-François Arrighi (414986)

December 2018

Figure S1. matK phylogeny of the genus Aeschynomene and allied genera. Bayesian phylogenetic reconst...

Additional file 8: Figure S5. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 4: Figure S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 3: Table S3. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Mean read depth and standard deviation for each accession, across all loci. (DOCX 45 kb

Additional file 1: Table S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Species used in this study along with accession numbers. PI and W6 numbers are from United States De...

Data from: Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Eriksson, Jonna Sofia
Sousa, Filipe de
Bertrand, Yann J.K.
Antonelli, Alexandre
Oxelman, Bengt
Pfeil, Bernard E.

January 2018

Background: Whole genome duplication plays a central role in plant evolution. There are two main cla...

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna S. Eriksson
Filipe de Sousa
Yann J. K. Bertrand
Alexandre Antonelli
Bengt Oxelman
Bernard E. Pfeil

January 2018

Abstract Background Whole genome duplication plays a central role in plant evolution. There are two ...

Plastid phylogenomics uncovers multiple species in Medicago truncatula (Fabaceae) germplasm accessions

Choi, In-Su
Wojciechowski, Martin
Steele, Kelly
Hopkins, Andrew
Ruhlman, Tracey
Jansen, Robert

December 2022

Medicago truncatula is a model legume that has been extensively investigated in diverse subdisciplin...

Additional file 2: Figure S2. of Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping

Lars-Gernot Otto (4349434)
Prodyut Mondal (4349425)
Jonathan Brassac (174425)
Susanne Preiss (2445280)
Jörg Degenhardt (739673)
Sang He (4349431)
Jochen Reif (3312300)
Timothy Sharbel (4349428)

August 2017

STRUCTURE* analysis (K = 4) including outgroup M. discoidea (last 4 samples, blue) reveals strict ge...

FIGURE 3. UPGMA dendrogram for Medicago rigidula and M in Molecular studies of Iranian populations support the morphology-based taxonomic separation of Medicago rigidula and M. rigiduloides

Bayat, Mitra
Assadi, Mostafa
Small, Ernest
Mehregan, Iraj

September 2021

FIGURE 3. UPGMA dendrogram for Medicago rigidula and M. rigiduloides populations accessions based on...

Data from: Phylogenetic signal variation in the genomes of Medicago (Fabaceae)

Yoder, Jeremy B.
Briskine, Roman
Mudge, Joann
Farmer, Andrew
Paape, Timothy
Steele, Kelly
Weiblen, George D.
Bharti, Arvind K.
Zhou, Peng
May, Gregory D.
Young, Nevin D.
Tiffin, Peter

February 2013

Genome-scale data offer the opportunity to clarify phylogenetic relationships that are difficult to ...

Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae)

Jeremy B. Yoder
Roman Briskine
Joann Mudge
Andrew Farmer
Timothy Paape
Kelly Steele
George D
Arvind K. Bharti
Peng Zhou
Gregory D. May
Nevin D. Young
Peter Tiffin

January 2013

Abstract.—Genome-scale data offer the opportunity to clarify phylogenetic relationships that are dif...

Relationships among diploid members of the Medicago sativa (Fabaceae) species complex based on chloroplast and mitochondrial DNA sequences.

October 2010

Relationships among diploid members of the Medicago sativa (Fabaceae) species complex based on chlor...

Additional file 4: Figure S1. of Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations

Li Zhang (8200)
Christopher Dietrich (801833)
Daozheng Qin (801832)

July 2016

Estimated number of genetic clusters obtained with Structure for K value ranging from 1 to 10 using ...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 4: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

Laurent Brottier (5055641)
Clémence Chaintreuil (412783)
Paul Simion (3309834)
Céline Scornavacca (6055568)
Ronan Rivallan (118115)
Pierre Mournet (3177897)
Lionel Moulin (412786)
Gwilym Lewis (5055650)
Joël Fardoux (2155249)
Spencer Brown (414988)
Mario Gomez-Pacheco (5055644)
Mickaël Bourges (5055635)
Catherine Hervouet (123895)
Mathieu Gueye (6055571)
Robin Duponnois (4603774)
Heriniaina Ramanankierana (2835449)
Herizo Randriambanona (5055653)
Hervé Vandrot (5055656)
Maria Zabaleta (6055574)
Maitrayee DasGupta (6055577)
Angélique D’Hont (428420)
Eric Giraud (348644)
Jean-François Arrighi (414986)

December 2018

Figure S1. matK phylogeny of the genus Aeschynomene and allied genera. Bayesian phylogenetic reconst...

Additional file 8: Figure S5. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 4: Figure S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Phylogenetic relationship of Medicago based on phased alleles and majority consensus sequences, gene...

Additional file 3: Table S3. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Mean read depth and standard deviation for each accession, across all loci. (DOCX 45 kb

Additional file 1: Table S1. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna Eriksson (4802400)
Filipe de Sousa (646591)
Yann Bertrand (182077)
Alexandre Antonelli (114105)
Bengt Oxelman (99756)
Bernard Pfeil (3710854)

January 2018

Species used in this study along with accession numbers. PI and W6 numbers are from United States De...

Data from: Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Eriksson, Jonna Sofia
Sousa, Filipe de
Bertrand, Yann J.K.
Antonelli, Alexandre
Oxelman, Bengt
Pfeil, Bernard E.

January 2018

Background: Whole genome duplication plays a central role in plant evolution. There are two main cla...

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna S. Eriksson
Filipe de Sousa
Yann J. K. Bertrand
Alexandre Antonelli
Bengt Oxelman
Bernard E. Pfeil

January 2018

Abstract Background Whole genome duplication plays a central role in plant evolution. There are two ...

Plastid phylogenomics uncovers multiple species in Medicago truncatula (Fabaceae) germplasm accessions

Choi, In-Su
Wojciechowski, Martin
Steele, Kelly
Hopkins, Andrew
Ruhlman, Tracey
Jansen, Robert

December 2022

Medicago truncatula is a model legume that has been extensively investigated in diverse subdisciplin...

Additional file 2: Figure S2. of Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping

Lars-Gernot Otto (4349434)
Prodyut Mondal (4349425)
Jonathan Brassac (174425)
Susanne Preiss (2445280)
Jörg Degenhardt (739673)
Sang He (4349431)
Jochen Reif (3312300)
Timothy Sharbel (4349428)

August 2017

STRUCTURE* analysis (K = 4) including outgroup M. discoidea (last 4 samples, blue) reveals strict ge...

FIGURE 3. UPGMA dendrogram for Medicago rigidula and M in Molecular studies of Iranian populations support the morphology-based taxonomic separation of Medicago rigidula and M. rigiduloides

Bayat, Mitra
Assadi, Mostafa
Small, Ernest
Mehregan, Iraj

September 2021

FIGURE 3. UPGMA dendrogram for Medicago rigidula and M. rigiduloides populations accessions based on...

Data from: Phylogenetic signal variation in the genomes of Medicago (Fabaceae)

Yoder, Jeremy B.
Briskine, Roman
Mudge, Joann
Farmer, Andrew
Paape, Timothy
Steele, Kelly
Weiblen, George D.
Bharti, Arvind K.
Zhou, Peng
May, Gregory D.
Young, Nevin D.
Tiffin, Peter

February 2013

Genome-scale data offer the opportunity to clarify phylogenetic relationships that are difficult to ...

Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae)

Jeremy B. Yoder
Roman Briskine
Joann Mudge
Andrew Farmer
Timothy Paape
Kelly Steele
George D
Arvind K. Bharti
Peng Zhou
Gregory D. May
Nevin D. Young
Peter Tiffin

January 2013

Abstract.—Genome-scale data offer the opportunity to clarify phylogenetic relationships that are dif...

Relationships among diploid members of the Medicago sativa (Fabaceae) species complex based on chloroplast and mitochondrial DNA sequences.

October 2010

Relationships among diploid members of the Medicago sativa (Fabaceae) species complex based on chlor...

Additional file 4: Figure S1. of Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations

Li Zhang (8200)
Christopher Dietrich (801833)
Daozheng Qin (801832)

July 2016

Estimated number of genetic clusters obtained with Structure for K value ranging from 1 to 10 using ...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 4: of A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

Laurent Brottier (5055641)
Clémence Chaintreuil (412783)
Paul Simion (3309834)
Céline Scornavacca (6055568)
Ronan Rivallan (118115)
Pierre Mournet (3177897)
Lionel Moulin (412786)
Gwilym Lewis (5055650)
Joël Fardoux (2155249)
Spencer Brown (414988)
Mario Gomez-Pacheco (5055644)
Mickaël Bourges (5055635)
Catherine Hervouet (123895)
Mathieu Gueye (6055571)
Robin Duponnois (4603774)
Heriniaina Ramanankierana (2835449)
Herizo Randriambanona (5055653)
Hervé Vandrot (5055656)
Maria Zabaleta (6055574)
Maitrayee DasGupta (6055577)
Angélique D’Hont (428420)
Eric Giraud (348644)
Jean-François Arrighi (414986)

December 2018

Figure S1. matK phylogeny of the genus Aeschynomene and allied genera. Bayesian phylogenetic reconst...

Additional file 5: Figure S2. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Abstract

Extracted data

Additional file 5: Figure S2. of Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Abstract

Extracted data

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