Summary: Velvet is a popular open-source de novo genome assem-bly software tool, which is run from the Unix command line. Most of the problems experienced by new users of Velvet revolve around con-structing syntactically and semantically correct command lines, get-ting input files into acceptable formats and assessing the output. Here, we present Velvet Assembler Graphical User Environment (VAGUE), a multi-platform graphical front-end for Velvet. VAGUE aims to make sequence assembly accessible to a wider audience and to facilitate better usage amongst existing users of Velvet. Availability and implementation: VAGUE is implemented in JRuby and targets the Java Virtual Machine. It is available under an open-source GPLv2 licence fro
Genome assembly in its two decades of history has produced significant research, in terms of both bi...
Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way...
De novo genome assembly is the process of reconstructing a complete genomic sequence from countless ...
Summary: Velvet is a popular open-source de novo genome as-sembly software tool which is run from t...
Summary: Scientists now use high-throughput sequencing technologies and short-read assembly methods ...
We present, JAZZ, a new graphical algorithm for whole genome assembly that self-consistently treats ...
Summary: Current web-based genome browsers require repetitious user input to scroll over long distan...
GFAKluge is a set of command line utilities and a C++ library for parsing and manipulating the Graph...
Long-read, single-molecule DNA sequencing technologies have triggered a revolution in genomics by en...
There is a rapidly increasing amount of de novo genome assembly using next-generation sequencing (NG...
It is a challenging job for genome analysts to accurately debug, troubleshoot, and validate genome a...
Background: Next generation sequencing technology has allowed efficient production of draft genomes ...
Summary: The rapid development of CRISPR-Cas9 mediated genome editing techniques has given rise to a...
We describe VGEA (Viral Genomes Easily Assembled), a snakemake workflow for advanced assembly of vir...
Motivation: Efficient and fast next-generation sequencing (NGS) algo-rithms are essential to analyze...
Genome assembly in its two decades of history has produced significant research, in terms of both bi...
Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way...
De novo genome assembly is the process of reconstructing a complete genomic sequence from countless ...
Summary: Velvet is a popular open-source de novo genome as-sembly software tool which is run from t...
Summary: Scientists now use high-throughput sequencing technologies and short-read assembly methods ...
We present, JAZZ, a new graphical algorithm for whole genome assembly that self-consistently treats ...
Summary: Current web-based genome browsers require repetitious user input to scroll over long distan...
GFAKluge is a set of command line utilities and a C++ library for parsing and manipulating the Graph...
Long-read, single-molecule DNA sequencing technologies have triggered a revolution in genomics by en...
There is a rapidly increasing amount of de novo genome assembly using next-generation sequencing (NG...
It is a challenging job for genome analysts to accurately debug, troubleshoot, and validate genome a...
Background: Next generation sequencing technology has allowed efficient production of draft genomes ...
Summary: The rapid development of CRISPR-Cas9 mediated genome editing techniques has given rise to a...
We describe VGEA (Viral Genomes Easily Assembled), a snakemake workflow for advanced assembly of vir...
Motivation: Efficient and fast next-generation sequencing (NGS) algo-rithms are essential to analyze...
Genome assembly in its two decades of history has produced significant research, in terms of both bi...
Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way...
De novo genome assembly is the process of reconstructing a complete genomic sequence from countless ...