<p>(A) Means (solid circles) and 0.05 quantiles (open circles) for 10000 simulated pure birth trees of various sizes. Black indicates entire most recent time interval simulated and red indicates zero time after the most recent cladogenic event. Hatched line indicates γ = −1.645 (critical threshold for significance of γ at α = 0.05). Shaded region shows discrepancy between 0.05 quantiles between simulation algorithms. (B) The persistent effect of most recent time interval simulation for trees simulated with incomplete lineage sampling. Shaded region shows discrepancy between 0.05 quantiles between simulation algorithms, where type I error at α = 0.05 occurs if simulation algorithm fails to simulate the entirety of most recent time interval. ...
<p>Simulation results. Evolution of the budding index (fraction of budded cells in a cell population...
<p>A full tree produced by the sampled ancestor birth-death process on the left and a reconstructed ...
<p>For setting and (), we estimated the parameter from the birth-death trees (A) and the coalesce...
<p>A) γ and tree deviation values. Horizontal hatched line indicates 0.05 quantile for γ values (γ =...
<p>(A) γ values for 50000 simulated trees containing 100 taxa with two diversification rates (a rela...
<p>For setting (), we modified the birth-death tree simulations to include periods of higher () and...
<p>The graph shows the widths of relative 95% HPD intervals of the turnover rate, , against tree siz...
<p>The graph shows median estimates (black dots) and 95% HPD intervals (grey lines) against true val...
<p>Trees were simulated under three different models: constant-rate pure birth (solid line), decreas...
<p><b>-Statistic.</b> Results from simulations showing the Type-1 error rate for the statisitc, sig...
Effect of the proportion of species sampled (A) and the length of the time interval between acquisit...
<p>Simulations specified 1000 actual extant taxa, pruned to 200 taxa to represent incomplete taxon s...
<p>In each panel at most one condition is violated. (a) Mean of 1.0 is used for the Poisson prior on...
<p>Means (±standard deviation) from Monte Carlo simulations (<i>n</i> = 10 over 100 years) for basel...
<p>Trees were simulated under three different models: constant-rate pure birth (solid line), decreas...
<p>Simulation results. Evolution of the budding index (fraction of budded cells in a cell population...
<p>A full tree produced by the sampled ancestor birth-death process on the left and a reconstructed ...
<p>For setting and (), we estimated the parameter from the birth-death trees (A) and the coalesce...
<p>A) γ and tree deviation values. Horizontal hatched line indicates 0.05 quantile for γ values (γ =...
<p>(A) γ values for 50000 simulated trees containing 100 taxa with two diversification rates (a rela...
<p>For setting (), we modified the birth-death tree simulations to include periods of higher () and...
<p>The graph shows the widths of relative 95% HPD intervals of the turnover rate, , against tree siz...
<p>The graph shows median estimates (black dots) and 95% HPD intervals (grey lines) against true val...
<p>Trees were simulated under three different models: constant-rate pure birth (solid line), decreas...
<p><b>-Statistic.</b> Results from simulations showing the Type-1 error rate for the statisitc, sig...
Effect of the proportion of species sampled (A) and the length of the time interval between acquisit...
<p>Simulations specified 1000 actual extant taxa, pruned to 200 taxa to represent incomplete taxon s...
<p>In each panel at most one condition is violated. (a) Mean of 1.0 is used for the Poisson prior on...
<p>Means (±standard deviation) from Monte Carlo simulations (<i>n</i> = 10 over 100 years) for basel...
<p>Trees were simulated under three different models: constant-rate pure birth (solid line), decreas...
<p>Simulation results. Evolution of the budding index (fraction of budded cells in a cell population...
<p>A full tree produced by the sampled ancestor birth-death process on the left and a reconstructed ...
<p>For setting and (), we estimated the parameter from the birth-death trees (A) and the coalesce...