We analyzed the effects of sewage discharge on a subtropical estuary by comparing the functional diversity of intertidal macroinvertebrate assemblages in contaminated with non-contaminated reference areas. Functional structure was assessed using biological traits analysis (BTA) and four multivariate indices (FRic, FEve, FDis and Rao's Q) of functional diversity. Our results showed clear and temporally consistent changes in macrobenthic functional structure in contaminated areas. However, these results depended on whether abundance- or biomass-based measurements were used, with abundance-based analyses distinguishing most clearly between sewage contamination conditions. Differences between contaminated and non-contaminated conditions were al...