Differentiating between clonal growth and limited gene flow using spatial autocorrelation of microsatellites

In plant populations alleles often deviate from a random distribution and reveal positive autocorrelation at short distances. In species with both clonal and sexual reproduction, such clustering may be because ramets of the same genet were sampled at nearby locations. Alternatively, clustering may be the result of limited gene flow through pollen or seeds (isolation-by-distance). Were, we modify a conventional spatial autocorrelation analysis using the join-count statistic in order to differentiate between these two causes of genetic structure. We examined the distribution of seven microsatellite loci representing 37 alleles in a 20 x 80 m plot of a perennial population of eelgrass Zostera marina L. In analysing join-counts between all like genotypes we found significant genetic autocorrelation among ramets at distances between 1 and 7 m (P