This work addresses the spread of a disease within an urban system, definedas a network of interconnected cities. The first step consists of comparing two differentapproaches: a macroscopic one, based on a system of coupled Ordinary DifferentialEquations (ODE) Susceptible-Infected-Recovered (SIR) systems exploiting populations onnodes and flows on edges (so-called metapopulational model), and a hybrid one, couplingODE SIR systems on nodes and agents traveling on edges. Under homogeneous conditions(mean field approximation), this comparison leads to similar results on the outputs on whichwe focus (the maximum intensity of the epidemic, its duration and the time of the epidemicpeak). However, when it comes to setting up epidemic control strategie...